Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09700

Experiment: m.b. Benzethonium chloride 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09690 and PGA1_c09700 are separated by 214 nucleotidesPGA1_c09700 and PGA1_c09710 are separated by 571 nucleotides PGA1_c09690: PGA1_c09690 - cell division protein FtsZ, at 993,830 to 995,623 _c09690 PGA1_c09700: PGA1_c09700 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC, at 995,838 to 996,773 _c09700 PGA1_c09710: PGA1_c09710 - putative outer membrane assembly lipoprotein, at 997,345 to 998,193 _c09710 Position (kb) 995 996 997Strain fitness (log2 ratio) -2 -1 0 1 2at 995.690 kb on + strandat 995.698 kb on - strandat 995.720 kb on + strandat 996.721 kb on + strandat 996.734 kb on - strandat 996.909 kb on + strandat 996.917 kb on - strandat 996.962 kb on - strandat 996.964 kb on + strandat 997.106 kb on + strandat 997.134 kb on - strandat 997.157 kb on - strandat 997.157 kb on - strandat 997.171 kb on + strandat 997.180 kb on - strandat 997.190 kb on + strandat 997.190 kb on + strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.198 kb on - strandat 997.208 kb on + strandat 997.208 kb on + strandat 997.208 kb on + strandat 997.208 kb on - strandat 997.216 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.0125 mM
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995,690 + +0.7
995,698 - +1.2
995,720 + -0.1
996,721 + +0.4
996,734 - -0.6
996,909 + -0.9
996,917 - -1.0
996,962 - +0.1
996,964 + -0.4
997,106 + -1.1
997,134 - +0.8
997,157 - -1.3
997,157 - +0.2
997,171 + +0.0
997,180 - -0.3
997,190 + +1.5
997,190 + +1.5
997,198 - -1.5
997,198 - +0.8
997,198 - -0.6
997,198 - -0.3
997,198 - +2.5
997,198 - -0.3
997,198 - +0.5
997,198 - +0.5
997,198 - -0.9
997,198 - -0.2
997,198 - -2.2
997,208 + -0.2
997,208 + -0.0
997,208 + -0.8
997,208 - -2.5
997,216 - -0.7

Or see this region's nucleotide sequence