Experiment: m.b. Benzethonium chloride 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c00430 and PGA1_c00440 are separated by 105 nucleotides PGA1_c00440 and PGA1_c00450 are separated by 73 nucleotides PGA1_c00450 and PGA1_c00460 are separated by 57 nucleotides
PGA1_c00430: PGA1_c00430 - fumarylacetoacetase Fah, at 47,516 to 48,772
_c00430
PGA1_c00440: PGA1_c00440 - homogentisate 1,2-dioxygenase HmgA, at 48,878 to 50,239
_c00440
PGA1_c00450: PGA1_c00450 - transcriptional regulator, marR family, at 50,313 to 50,753
_c00450
PGA1_c00460: PGA1_c00460 - adenylate cyclase domain-containing protein, at 50,811 to 52,025
_c00460
Position (kb) 48
49
50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 47.887 kb on + strand, within PGA1_c00430 at 47.925 kb on - strand, within PGA1_c00430 at 48.002 kb on - strand, within PGA1_c00430 at 48.059 kb on + strand, within PGA1_c00430 at 48.067 kb on - strand, within PGA1_c00430 at 48.067 kb on - strand, within PGA1_c00430 at 48.067 kb on - strand, within PGA1_c00430 at 48.161 kb on - strand, within PGA1_c00430 at 48.249 kb on - strand, within PGA1_c00430 at 48.285 kb on - strand, within PGA1_c00430 at 48.287 kb on + strand, within PGA1_c00430 at 48.356 kb on - strand, within PGA1_c00430 at 48.367 kb on + strand, within PGA1_c00430 at 48.380 kb on + strand, within PGA1_c00430 at 48.390 kb on + strand, within PGA1_c00430 at 48.405 kb on - strand, within PGA1_c00430 at 48.523 kb on + strand, within PGA1_c00430 at 48.523 kb on + strand, within PGA1_c00430 at 48.526 kb on - strand, within PGA1_c00430 at 48.559 kb on + strand, within PGA1_c00430 at 48.591 kb on - strand, within PGA1_c00430 at 48.660 kb on + strand at 48.704 kb on - strand at 48.717 kb on + strand at 48.730 kb on - strand at 48.751 kb on + strand at 48.851 kb on - strand at 48.856 kb on - strand at 48.982 kb on - strand at 49.017 kb on + strand, within PGA1_c00440 at 49.093 kb on + strand, within PGA1_c00440 at 49.093 kb on + strand, within PGA1_c00440 at 49.101 kb on - strand, within PGA1_c00440 at 49.101 kb on - strand, within PGA1_c00440 at 49.108 kb on + strand, within PGA1_c00440 at 49.116 kb on - strand, within PGA1_c00440 at 49.130 kb on + strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.138 kb on - strand, within PGA1_c00440 at 49.142 kb on + strand, within PGA1_c00440 at 49.151 kb on - strand, within PGA1_c00440 at 49.174 kb on + strand, within PGA1_c00440 at 49.229 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.269 kb on + strand, within PGA1_c00440 at 49.274 kb on + strand, within PGA1_c00440 at 49.277 kb on - strand, within PGA1_c00440 at 49.279 kb on + strand, within PGA1_c00440 at 49.279 kb on + strand, within PGA1_c00440 at 49.282 kb on - strand, within PGA1_c00440 at 49.287 kb on - strand, within PGA1_c00440 at 49.287 kb on - strand, within PGA1_c00440 at 49.287 kb on - strand, within PGA1_c00440 at 49.333 kb on + strand, within PGA1_c00440 at 49.338 kb on + strand, within PGA1_c00440 at 49.356 kb on - strand, within PGA1_c00440 at 49.356 kb on - strand, within PGA1_c00440 at 49.451 kb on + strand, within PGA1_c00440 at 49.453 kb on + strand, within PGA1_c00440 at 49.453 kb on + strand, within PGA1_c00440 at 49.506 kb on - strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.549 kb on + strand, within PGA1_c00440 at 49.557 kb on - strand, within PGA1_c00440 at 49.557 kb on - strand, within PGA1_c00440 at 49.600 kb on - strand, within PGA1_c00440 at 49.621 kb on - strand, within PGA1_c00440 at 49.629 kb on + strand, within PGA1_c00440 at 49.633 kb on + strand, within PGA1_c00440 at 49.637 kb on - strand, within PGA1_c00440 at 49.637 kb on - strand, within PGA1_c00440 at 49.693 kb on + strand, within PGA1_c00440 at 49.698 kb on - strand, within PGA1_c00440 at 49.712 kb on + strand, within PGA1_c00440 at 49.716 kb on + strand, within PGA1_c00440 at 49.771 kb on - strand, within PGA1_c00440 at 49.777 kb on - strand, within PGA1_c00440 at 49.833 kb on - strand, within PGA1_c00440 at 49.844 kb on + strand, within PGA1_c00440 at 49.852 kb on - strand, within PGA1_c00440 at 49.862 kb on + strand, within PGA1_c00440 at 49.878 kb on - strand, within PGA1_c00440 at 49.878 kb on - strand, within PGA1_c00440 at 49.878 kb on - strand, within PGA1_c00440 at 49.906 kb on + strand, within PGA1_c00440 at 49.909 kb on - strand, within PGA1_c00440 at 49.914 kb on - strand, within PGA1_c00440 at 49.914 kb on - strand, within PGA1_c00440 at 49.916 kb on + strand, within PGA1_c00440 at 49.919 kb on - strand, within PGA1_c00440 at 49.921 kb on + strand, within PGA1_c00440 at 49.924 kb on - strand, within PGA1_c00440 at 49.968 kb on - strand, within PGA1_c00440 at 49.968 kb on - strand, within PGA1_c00440 at 49.979 kb on + strand, within PGA1_c00440 at 50.000 kb on - strand, within PGA1_c00440 at 50.035 kb on + strand, within PGA1_c00440 at 50.044 kb on - strand, within PGA1_c00440 at 50.044 kb on - strand, within PGA1_c00440 at 50.045 kb on + strand, within PGA1_c00440 at 50.045 kb on + strand, within PGA1_c00440 at 50.045 kb on + strand, within PGA1_c00440 at 50.046 kb on + strand, within PGA1_c00440 at 50.053 kb on - strand, within PGA1_c00440 at 50.058 kb on + strand, within PGA1_c00440 at 50.058 kb on + strand, within PGA1_c00440 at 50.060 kb on + strand, within PGA1_c00440 at 50.060 kb on + strand, within PGA1_c00440 at 50.066 kb on - strand, within PGA1_c00440 at 50.066 kb on - strand, within PGA1_c00440 at 50.105 kb on + strand at 50.113 kb on - strand at 50.113 kb on - strand at 50.119 kb on + strand at 50.120 kb on - strand at 50.124 kb on - strand at 50.130 kb on + strand at 50.131 kb on - strand at 50.132 kb on - strand at 50.168 kb on + strand at 50.178 kb on + strand at 50.186 kb on - strand at 50.196 kb on - strand at 50.202 kb on + strand at 50.219 kb on + strand at 50.219 kb on + strand at 50.227 kb on - strand at 50.248 kb on + strand at 50.268 kb on - strand at 50.298 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.303 kb on + strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.311 kb on - strand at 50.363 kb on + strand, within PGA1_c00450 at 50.363 kb on + strand, within PGA1_c00450 at 50.371 kb on + strand, within PGA1_c00450 at 50.384 kb on - strand, within PGA1_c00450 at 50.467 kb on - strand, within PGA1_c00450 at 50.482 kb on - strand, within PGA1_c00450 at 50.557 kb on + strand, within PGA1_c00450 at 50.562 kb on + strand, within PGA1_c00450 at 50.603 kb on + strand, within PGA1_c00450 at 50.629 kb on - strand, within PGA1_c00450 at 50.677 kb on - strand, within PGA1_c00450 at 50.704 kb on + strand, within PGA1_c00450 at 50.709 kb on + strand, within PGA1_c00450 at 50.722 kb on - strand at 50.734 kb on - strand at 50.776 kb on + strand at 50.784 kb on - strand at 50.794 kb on + strand at 50.802 kb on - strand at 50.857 kb on + strand at 50.857 kb on + strand at 50.859 kb on + strand at 50.865 kb on - strand at 50.867 kb on - strand at 50.867 kb on - strand at 50.867 kb on - strand at 50.875 kb on + strand at 50.881 kb on + strand at 50.881 kb on + strand at 50.883 kb on - strand at 50.889 kb on - strand at 50.916 kb on - strand at 50.934 kb on + strand, within PGA1_c00460 at 51.016 kb on - strand, within PGA1_c00460 at 51.049 kb on - strand, within PGA1_c00460 at 51.051 kb on - strand, within PGA1_c00460 at 51.084 kb on - strand, within PGA1_c00460 at 51.118 kb on - strand, within PGA1_c00460 at 51.118 kb on - strand, within PGA1_c00460 at 51.135 kb on + strand, within PGA1_c00460 at 51.163 kb on + strand, within PGA1_c00460 at 51.173 kb on + strand, within PGA1_c00460 at 51.173 kb on + strand, within PGA1_c00460 at 51.198 kb on - strand, within PGA1_c00460 at 51.233 kb on + strand, within PGA1_c00460 at 51.239 kb on - strand, within PGA1_c00460 at 51.239 kb on - strand, within PGA1_c00460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.0125 mM remove 47,887 + PGA1_c00430 0.30 +0.8 47,925 - PGA1_c00430 0.33 -0.1 48,002 - PGA1_c00430 0.39 +1.3 48,059 + PGA1_c00430 0.43 -0.4 48,067 - PGA1_c00430 0.44 -1.8 48,067 - PGA1_c00430 0.44 +0.1 48,067 - PGA1_c00430 0.44 +1.0 48,161 - PGA1_c00430 0.51 +3.4 48,249 - PGA1_c00430 0.58 +0.4 48,285 - PGA1_c00430 0.61 +0.4 48,287 + PGA1_c00430 0.61 +1.0 48,356 - PGA1_c00430 0.67 +1.2 48,367 + PGA1_c00430 0.68 -0.6 48,380 + PGA1_c00430 0.69 -0.1 48,390 + PGA1_c00430 0.70 +0.1 48,405 - PGA1_c00430 0.71 -0.1 48,523 + PGA1_c00430 0.80 +1.5 48,523 + PGA1_c00430 0.80 -0.2 48,526 - PGA1_c00430 0.80 -1.6 48,559 + PGA1_c00430 0.83 +0.5 48,591 - PGA1_c00430 0.86 +0.3 48,660 + +0.2 48,704 - -1.6 48,717 + -0.2 48,730 - -1.2 48,751 + -0.6 48,851 - -1.1 48,856 - -0.7 48,982 - +0.4 49,017 + PGA1_c00440 0.10 +0.6 49,093 + PGA1_c00440 0.16 -0.1 49,093 + PGA1_c00440 0.16 +1.1 49,101 - PGA1_c00440 0.16 -0.7 49,101 - PGA1_c00440 0.16 +0.2 49,108 + PGA1_c00440 0.17 +0.9 49,116 - PGA1_c00440 0.17 +2.1 49,130 + PGA1_c00440 0.19 +0.1 49,138 - PGA1_c00440 0.19 -1.1 49,138 - PGA1_c00440 0.19 -0.4 49,138 - PGA1_c00440 0.19 +0.1 49,138 - PGA1_c00440 0.19 +0.3 49,142 + PGA1_c00440 0.19 +1.0 49,151 - PGA1_c00440 0.20 -2.5 49,174 + PGA1_c00440 0.22 +0.2 49,229 + PGA1_c00440 0.26 +1.1 49,269 + PGA1_c00440 0.29 -0.1 49,269 + PGA1_c00440 0.29 -0.7 49,269 + PGA1_c00440 0.29 +0.7 49,269 + PGA1_c00440 0.29 -2.1 49,274 + PGA1_c00440 0.29 +0.5 49,277 - PGA1_c00440 0.29 +0.3 49,279 + PGA1_c00440 0.29 +0.5 49,279 + PGA1_c00440 0.29 -0.1 49,282 - PGA1_c00440 0.30 -0.5 49,287 - PGA1_c00440 0.30 -0.2 49,287 - PGA1_c00440 0.30 +0.1 49,287 - PGA1_c00440 0.30 -0.8 49,333 + PGA1_c00440 0.33 -0.8 49,338 + PGA1_c00440 0.34 -0.3 49,356 - PGA1_c00440 0.35 -0.5 49,356 - PGA1_c00440 0.35 -0.4 49,451 + PGA1_c00440 0.42 +0.5 49,453 + PGA1_c00440 0.42 +1.2 49,453 + PGA1_c00440 0.42 -1.3 49,506 - PGA1_c00440 0.46 +1.0 49,549 + PGA1_c00440 0.49 +0.5 49,549 + PGA1_c00440 0.49 +0.9 49,549 + PGA1_c00440 0.49 +0.5 49,549 + PGA1_c00440 0.49 +1.4 49,549 + PGA1_c00440 0.49 -0.4 49,557 - PGA1_c00440 0.50 -0.4 49,557 - PGA1_c00440 0.50 -0.9 49,600 - PGA1_c00440 0.53 +0.5 49,621 - PGA1_c00440 0.55 +0.7 49,629 + PGA1_c00440 0.55 -0.3 49,633 + PGA1_c00440 0.55 -0.6 49,637 - PGA1_c00440 0.56 +0.4 49,637 - PGA1_c00440 0.56 +0.7 49,693 + PGA1_c00440 0.60 +0.4 49,698 - PGA1_c00440 0.60 -2.3 49,712 + PGA1_c00440 0.61 +0.9 49,716 + PGA1_c00440 0.62 -0.2 49,771 - PGA1_c00440 0.66 +0.4 49,777 - PGA1_c00440 0.66 -0.3 49,833 - PGA1_c00440 0.70 +0.4 49,844 + PGA1_c00440 0.71 +0.6 49,852 - PGA1_c00440 0.72 +0.5 49,862 + PGA1_c00440 0.72 -1.1 49,878 - PGA1_c00440 0.73 -1.1 49,878 - PGA1_c00440 0.73 +0.1 49,878 - PGA1_c00440 0.73 +0.8 49,906 + PGA1_c00440 0.75 +0.8 49,909 - PGA1_c00440 0.76 -0.2 49,914 - PGA1_c00440 0.76 +1.1 49,914 - PGA1_c00440 0.76 -1.2 49,916 + PGA1_c00440 0.76 -0.4 49,919 - PGA1_c00440 0.76 -2.4 49,921 + PGA1_c00440 0.77 +0.6 49,924 - PGA1_c00440 0.77 -0.3 49,968 - PGA1_c00440 0.80 -1.6 49,968 - PGA1_c00440 0.80 +1.7 49,979 + PGA1_c00440 0.81 -0.3 50,000 - PGA1_c00440 0.82 -0.1 50,035 + PGA1_c00440 0.85 +0.7 50,044 - PGA1_c00440 0.86 -0.6 50,044 - PGA1_c00440 0.86 +0.6 50,045 + PGA1_c00440 0.86 +0.3 50,045 + PGA1_c00440 0.86 -0.5 50,045 + PGA1_c00440 0.86 -0.9 50,046 + PGA1_c00440 0.86 +0.6 50,053 - PGA1_c00440 0.86 +1.3 50,058 + PGA1_c00440 0.87 -0.1 50,058 + PGA1_c00440 0.87 +0.3 50,060 + PGA1_c00440 0.87 +0.5 50,060 + PGA1_c00440 0.87 +0.1 50,066 - PGA1_c00440 0.87 -0.7 50,066 - PGA1_c00440 0.87 +0.8 50,105 + +0.3 50,113 - +0.7 50,113 - -0.1 50,119 + +0.4 50,120 - -0.3 50,124 - -0.5 50,130 + -0.3 50,131 - +0.5 50,132 - -0.3 50,168 + +1.8 50,178 + +0.4 50,186 - +0.1 50,196 - +0.9 50,202 + +0.4 50,219 + +0.7 50,219 + +1.1 50,227 - +0.7 50,248 + -0.1 50,268 - +0.1 50,298 + +0.5 50,303 + -0.2 50,303 + -0.7 50,303 + +0.8 50,303 + +0.1 50,303 + -1.4 50,303 + +0.1 50,303 + -0.5 50,303 + -3.1 50,303 + -0.9 50,303 + -0.3 50,303 + +0.9 50,303 + +0.1 50,303 + +0.8 50,311 - -0.2 50,311 - +0.0 50,311 - +0.5 50,311 - +0.2 50,311 - +0.1 50,311 - -1.2 50,311 - -0.3 50,311 - +0.8 50,311 - +0.1 50,311 - +0.5 50,311 - -0.6 50,311 - -0.4 50,311 - +1.6 50,311 - -1.8 50,311 - +0.4 50,363 + PGA1_c00450 0.11 +0.3 50,363 + PGA1_c00450 0.11 -1.1 50,371 + PGA1_c00450 0.13 +0.2 50,384 - PGA1_c00450 0.16 +0.3 50,467 - PGA1_c00450 0.35 -0.1 50,482 - PGA1_c00450 0.38 -0.2 50,557 + PGA1_c00450 0.55 +0.7 50,562 + PGA1_c00450 0.56 +1.2 50,603 + PGA1_c00450 0.66 -0.7 50,629 - PGA1_c00450 0.72 +0.7 50,677 - PGA1_c00450 0.83 +0.4 50,704 + PGA1_c00450 0.89 +0.1 50,709 + PGA1_c00450 0.90 -0.2 50,722 - +0.1 50,734 - -0.9 50,776 + -0.1 50,784 - -0.6 50,794 + +0.5 50,802 - -0.1 50,857 + +0.9 50,857 + -0.3 50,859 + -0.6 50,865 - -0.7 50,867 - -1.8 50,867 - +0.6 50,867 - -1.3 50,875 + -0.8 50,881 + -0.9 50,881 + +0.4 50,883 - -1.4 50,889 - -0.8 50,916 - +0.1 50,934 + PGA1_c00460 0.10 -1.8 51,016 - PGA1_c00460 0.17 -1.3 51,049 - PGA1_c00460 0.20 -0.3 51,051 - PGA1_c00460 0.20 -0.3 51,084 - PGA1_c00460 0.22 -0.6 51,118 - PGA1_c00460 0.25 +0.6 51,118 - PGA1_c00460 0.25 +0.5 51,135 + PGA1_c00460 0.27 -0.7 51,163 + PGA1_c00460 0.29 +0.6 51,173 + PGA1_c00460 0.30 +0.5 51,173 + PGA1_c00460 0.30 -0.4 51,198 - PGA1_c00460 0.32 -0.4 51,233 + PGA1_c00460 0.35 -0.1 51,239 - PGA1_c00460 0.35 +0.3 51,239 - PGA1_c00460 0.35 -0.1
Or see this region's nucleotide sequence