Experiment: m.b. Benzethonium chloride 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24500 and PGA1_c24510 are separated by 296 nucleotides PGA1_c24510 and PGA1_c24520 are separated by 13 nucleotides
PGA1_c24500: PGA1_c24500 - putative signal transduction response regulator receiver, at 2,551,910 to 2,552,629
_c24500
PGA1_c24510: PGA1_c24510 - Uncharacterized protein conserved in bacteria, at 2,552,926 to 2,554,149
_c24510
PGA1_c24520: PGA1_c24520 - Uncharacterized protein conserved in bacteria, at 2,554,163 to 2,555,560
_c24520
Position (kb)
2552
2553
2554
2555 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2552.018 kb on + strand, within PGA1_c24500 at 2552.024 kb on + strand, within PGA1_c24500 at 2552.109 kb on + strand, within PGA1_c24500 at 2552.164 kb on - strand, within PGA1_c24500 at 2552.195 kb on + strand, within PGA1_c24500 at 2552.228 kb on + strand, within PGA1_c24500 at 2552.320 kb on + strand, within PGA1_c24500 at 2552.369 kb on - strand, within PGA1_c24500 at 2552.415 kb on + strand, within PGA1_c24500 at 2552.415 kb on + strand, within PGA1_c24500 at 2552.431 kb on - strand, within PGA1_c24500 at 2552.433 kb on + strand, within PGA1_c24500 at 2552.441 kb on - strand, within PGA1_c24500 at 2552.450 kb on + strand, within PGA1_c24500 at 2552.455 kb on + strand, within PGA1_c24500 at 2552.468 kb on - strand, within PGA1_c24500 at 2552.478 kb on - strand, within PGA1_c24500 at 2552.501 kb on - strand, within PGA1_c24500 at 2552.593 kb on + strand at 2552.602 kb on - strand at 2552.656 kb on - strand at 2552.739 kb on + strand at 2552.763 kb on - strand at 2552.766 kb on - strand at 2552.806 kb on - strand at 2552.864 kb on + strand at 2552.872 kb on - strand at 2552.872 kb on - strand at 2552.890 kb on - strand at 2552.941 kb on + strand at 2552.949 kb on - strand at 2552.949 kb on - strand at 2552.958 kb on + strand at 2553.018 kb on + strand at 2553.047 kb on + strand at 2553.047 kb on + strand at 2553.047 kb on + strand at 2553.104 kb on - strand, within PGA1_c24510 at 2553.141 kb on - strand, within PGA1_c24510 at 2553.284 kb on + strand, within PGA1_c24510 at 2553.433 kb on + strand, within PGA1_c24510 at 2553.438 kb on + strand, within PGA1_c24510 at 2553.441 kb on - strand, within PGA1_c24510 at 2553.457 kb on + strand, within PGA1_c24510 at 2553.541 kb on - strand, within PGA1_c24510 at 2553.607 kb on + strand, within PGA1_c24510 at 2553.666 kb on - strand, within PGA1_c24510 at 2553.681 kb on - strand, within PGA1_c24510 at 2553.729 kb on + strand, within PGA1_c24510 at 2553.729 kb on + strand, within PGA1_c24510 at 2553.762 kb on - strand, within PGA1_c24510 at 2553.792 kb on - strand, within PGA1_c24510 at 2553.793 kb on + strand, within PGA1_c24510 at 2553.816 kb on - strand, within PGA1_c24510 at 2553.820 kb on - strand, within PGA1_c24510 at 2553.910 kb on + strand, within PGA1_c24510 at 2553.938 kb on - strand, within PGA1_c24510 at 2553.950 kb on + strand, within PGA1_c24510 at 2553.950 kb on + strand, within PGA1_c24510 at 2553.950 kb on + strand, within PGA1_c24510 at 2553.958 kb on - strand, within PGA1_c24510 at 2553.963 kb on - strand, within PGA1_c24510 at 2553.964 kb on - strand, within PGA1_c24510 at 2553.966 kb on + strand, within PGA1_c24510 at 2553.983 kb on + strand, within PGA1_c24510 at 2554.023 kb on - strand, within PGA1_c24510 at 2554.023 kb on - strand, within PGA1_c24510 at 2554.034 kb on + strand at 2554.036 kb on + strand at 2554.058 kb on - strand at 2554.103 kb on - strand at 2554.116 kb on + strand at 2554.124 kb on - strand at 2554.124 kb on - strand at 2554.137 kb on + strand at 2554.242 kb on - strand at 2554.330 kb on + strand, within PGA1_c24520 at 2554.388 kb on - strand, within PGA1_c24520 at 2554.397 kb on + strand, within PGA1_c24520 at 2554.424 kb on + strand, within PGA1_c24520 at 2554.429 kb on + strand, within PGA1_c24520 at 2554.468 kb on + strand, within PGA1_c24520 at 2554.476 kb on - strand, within PGA1_c24520 at 2554.538 kb on + strand, within PGA1_c24520 at 2554.597 kb on + strand, within PGA1_c24520 at 2554.610 kb on - strand, within PGA1_c24520 at 2554.610 kb on - strand, within PGA1_c24520 at 2554.629 kb on - strand, within PGA1_c24520 at 2554.799 kb on - strand, within PGA1_c24520 at 2554.924 kb on - strand, within PGA1_c24520 at 2554.949 kb on + strand, within PGA1_c24520 at 2554.989 kb on - strand, within PGA1_c24520 at 2555.014 kb on - strand, within PGA1_c24520 at 2555.030 kb on + strand, within PGA1_c24520 at 2555.053 kb on + strand, within PGA1_c24520 at 2555.071 kb on - strand, within PGA1_c24520 at 2555.131 kb on + strand, within PGA1_c24520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.0125 mM remove 2,552,018 + PGA1_c24500 0.15 +0.1 2,552,024 + PGA1_c24500 0.16 +0.3 2,552,109 + PGA1_c24500 0.28 +0.1 2,552,164 - PGA1_c24500 0.35 -2.1 2,552,195 + PGA1_c24500 0.40 +1.2 2,552,228 + PGA1_c24500 0.44 -0.6 2,552,320 + PGA1_c24500 0.57 -1.3 2,552,369 - PGA1_c24500 0.64 +0.9 2,552,415 + PGA1_c24500 0.70 -0.4 2,552,415 + PGA1_c24500 0.70 +0.3 2,552,431 - PGA1_c24500 0.72 -1.5 2,552,433 + PGA1_c24500 0.73 -0.6 2,552,441 - PGA1_c24500 0.74 -0.8 2,552,450 + PGA1_c24500 0.75 +0.8 2,552,455 + PGA1_c24500 0.76 -2.1 2,552,468 - PGA1_c24500 0.78 -0.2 2,552,478 - PGA1_c24500 0.79 +0.3 2,552,501 - PGA1_c24500 0.82 +0.7 2,552,593 + -0.7 2,552,602 - -0.0 2,552,656 - +1.3 2,552,739 + +0.0 2,552,763 - -0.2 2,552,766 - -1.4 2,552,806 - +0.3 2,552,864 + +0.6 2,552,872 - +0.3 2,552,872 - -0.1 2,552,890 - +0.3 2,552,941 + +0.4 2,552,949 - -0.3 2,552,949 - +0.9 2,552,958 + -0.0 2,553,018 + -1.1 2,553,047 + -0.1 2,553,047 + -1.1 2,553,047 + -0.1 2,553,104 - PGA1_c24510 0.15 -0.3 2,553,141 - PGA1_c24510 0.18 -0.0 2,553,284 + PGA1_c24510 0.29 -1.6 2,553,433 + PGA1_c24510 0.41 -1.4 2,553,438 + PGA1_c24510 0.42 -0.7 2,553,441 - PGA1_c24510 0.42 -0.2 2,553,457 + PGA1_c24510 0.43 -0.1 2,553,541 - PGA1_c24510 0.50 +0.8 2,553,607 + PGA1_c24510 0.56 +0.1 2,553,666 - PGA1_c24510 0.60 +0.8 2,553,681 - PGA1_c24510 0.62 +0.3 2,553,729 + PGA1_c24510 0.66 -0.8 2,553,729 + PGA1_c24510 0.66 -1.6 2,553,762 - PGA1_c24510 0.68 -0.2 2,553,792 - PGA1_c24510 0.71 -2.5 2,553,793 + PGA1_c24510 0.71 +0.4 2,553,816 - PGA1_c24510 0.73 -1.2 2,553,820 - PGA1_c24510 0.73 -1.2 2,553,910 + PGA1_c24510 0.80 -0.1 2,553,938 - PGA1_c24510 0.83 -0.2 2,553,950 + PGA1_c24510 0.84 +0.2 2,553,950 + PGA1_c24510 0.84 +0.3 2,553,950 + PGA1_c24510 0.84 +0.2 2,553,958 - PGA1_c24510 0.84 +0.9 2,553,963 - PGA1_c24510 0.85 -0.1 2,553,964 - PGA1_c24510 0.85 +0.3 2,553,966 + PGA1_c24510 0.85 -0.3 2,553,983 + PGA1_c24510 0.86 -0.7 2,554,023 - PGA1_c24510 0.90 -0.8 2,554,023 - PGA1_c24510 0.90 +0.1 2,554,034 + -0.8 2,554,036 + -0.3 2,554,058 - +0.1 2,554,103 - -2.6 2,554,116 + -0.4 2,554,124 - -1.9 2,554,124 - -0.8 2,554,137 + +0.4 2,554,242 - +0.2 2,554,330 + PGA1_c24520 0.12 +2.2 2,554,388 - PGA1_c24520 0.16 +0.6 2,554,397 + PGA1_c24520 0.17 -0.2 2,554,424 + PGA1_c24520 0.19 -0.4 2,554,429 + PGA1_c24520 0.19 +1.3 2,554,468 + PGA1_c24520 0.22 -0.2 2,554,476 - PGA1_c24520 0.22 +0.1 2,554,538 + PGA1_c24520 0.27 +0.6 2,554,597 + PGA1_c24520 0.31 -0.9 2,554,610 - PGA1_c24520 0.32 +1.8 2,554,610 - PGA1_c24520 0.32 +0.4 2,554,629 - PGA1_c24520 0.33 +1.9 2,554,799 - PGA1_c24520 0.45 -0.7 2,554,924 - PGA1_c24520 0.54 +1.4 2,554,949 + PGA1_c24520 0.56 -0.1 2,554,989 - PGA1_c24520 0.59 -0.2 2,555,014 - PGA1_c24520 0.61 -0.8 2,555,030 + PGA1_c24520 0.62 +0.6 2,555,053 + PGA1_c24520 0.64 +1.4 2,555,071 - PGA1_c24520 0.65 -0.6 2,555,131 + PGA1_c24520 0.69 +1.6
Or see this region's nucleotide sequence