Experiment: m.b. Benzethonium chloride 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21720 and PGA1_c21730 are separated by 198 nucleotides PGA1_c21730 and PGA1_c21740 are separated by 114 nucleotides PGA1_c21740 and PGA1_c21750 are separated by 20 nucleotides PGA1_c21750 and PGA1_c21760 are separated by 3 nucleotides
PGA1_c21720: PGA1_c21720 - putative S-adenosylmethionine uptake transporter, at 2,252,153 to 2,253,013
_c21720
PGA1_c21730: PGA1_c21730 - putative arginine exporter protein, at 2,253,212 to 2,253,817
_c21730
PGA1_c21740: PGA1_c21740 - transcriptional regulator, ArgP family, at 2,253,932 to 2,254,816
_c21740
PGA1_c21750: PGA1_c21750 - hypothetical protein, at 2,254,837 to 2,255,757
_c21750
PGA1_c21760: PGA1_c21760 - putative N-acetyltransferase, at 2,255,761 to 2,256,231
_c21760
Position (kb)
2253
2254
2255 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2252.943 kb on + strand at 2253.024 kb on - strand at 2253.050 kb on + strand at 2253.055 kb on + strand at 2253.087 kb on - strand at 2253.089 kb on - strand at 2253.089 kb on - strand at 2253.117 kb on + strand at 2253.130 kb on - strand at 2253.130 kb on - strand at 2253.152 kb on + strand at 2253.152 kb on + strand at 2253.160 kb on - strand at 2253.160 kb on - strand at 2253.160 kb on - strand at 2253.174 kb on - strand at 2253.200 kb on - strand at 2253.210 kb on + strand at 2253.210 kb on + strand at 2253.274 kb on + strand, within PGA1_c21730 at 2253.361 kb on - strand, within PGA1_c21730 at 2253.371 kb on + strand, within PGA1_c21730 at 2253.372 kb on - strand, within PGA1_c21730 at 2253.413 kb on + strand, within PGA1_c21730 at 2253.418 kb on + strand, within PGA1_c21730 at 2253.464 kb on - strand, within PGA1_c21730 at 2253.496 kb on - strand, within PGA1_c21730 at 2253.503 kb on + strand, within PGA1_c21730 at 2253.519 kb on - strand, within PGA1_c21730 at 2253.519 kb on - strand, within PGA1_c21730 at 2253.529 kb on - strand, within PGA1_c21730 at 2253.529 kb on - strand, within PGA1_c21730 at 2253.529 kb on - strand, within PGA1_c21730 at 2253.565 kb on + strand, within PGA1_c21730 at 2253.573 kb on - strand, within PGA1_c21730 at 2253.575 kb on - strand, within PGA1_c21730 at 2253.575 kb on - strand, within PGA1_c21730 at 2253.615 kb on + strand, within PGA1_c21730 at 2253.655 kb on - strand, within PGA1_c21730 at 2253.663 kb on + strand, within PGA1_c21730 at 2253.673 kb on + strand, within PGA1_c21730 at 2253.673 kb on - strand, within PGA1_c21730 at 2253.722 kb on + strand, within PGA1_c21730 at 2253.739 kb on + strand, within PGA1_c21730 at 2253.747 kb on - strand, within PGA1_c21730 at 2253.769 kb on + strand at 2253.773 kb on - strand at 2253.827 kb on - strand at 2253.841 kb on + strand at 2253.881 kb on + strand at 2253.979 kb on - strand at 2254.042 kb on + strand, within PGA1_c21740 at 2254.074 kb on + strand, within PGA1_c21740 at 2254.074 kb on + strand, within PGA1_c21740 at 2254.099 kb on + strand, within PGA1_c21740 at 2254.110 kb on + strand, within PGA1_c21740 at 2254.244 kb on - strand, within PGA1_c21740 at 2254.248 kb on + strand, within PGA1_c21740 at 2254.280 kb on + strand, within PGA1_c21740 at 2254.363 kb on - strand, within PGA1_c21740 at 2254.404 kb on - strand, within PGA1_c21740 at 2254.411 kb on + strand, within PGA1_c21740 at 2254.485 kb on + strand, within PGA1_c21740 at 2254.524 kb on - strand at 2254.544 kb on - strand, within PGA1_c21740 at 2254.561 kb on - strand, within PGA1_c21740 at 2254.568 kb on - strand, within PGA1_c21740 at 2254.592 kb on + strand, within PGA1_c21740 at 2254.600 kb on - strand, within PGA1_c21740 at 2254.622 kb on + strand, within PGA1_c21740 at 2254.676 kb on + strand, within PGA1_c21740 at 2254.725 kb on + strand, within PGA1_c21740 at 2254.754 kb on + strand at 2254.780 kb on + strand at 2254.837 kb on + strand at 2254.907 kb on - strand at 2254.928 kb on + strand at 2254.928 kb on + strand at 2254.936 kb on - strand, within PGA1_c21750 at 2254.939 kb on + strand, within PGA1_c21750 at 2254.946 kb on + strand, within PGA1_c21750 at 2254.966 kb on + strand, within PGA1_c21750 at 2254.968 kb on + strand, within PGA1_c21750 at 2254.986 kb on + strand, within PGA1_c21750 at 2254.999 kb on + strand, within PGA1_c21750 at 2255.001 kb on + strand, within PGA1_c21750 at 2255.007 kb on - strand, within PGA1_c21750 at 2255.007 kb on - strand, within PGA1_c21750 at 2255.042 kb on - strand, within PGA1_c21750 at 2255.097 kb on - strand, within PGA1_c21750 at 2255.107 kb on - strand, within PGA1_c21750 at 2255.139 kb on + strand, within PGA1_c21750 at 2255.139 kb on + strand, within PGA1_c21750 at 2255.147 kb on - strand, within PGA1_c21750 at 2255.243 kb on - strand, within PGA1_c21750 at 2255.243 kb on - strand, within PGA1_c21750 at 2255.280 kb on - strand, within PGA1_c21750 at 2255.290 kb on + strand, within PGA1_c21750 at 2255.291 kb on + strand, within PGA1_c21750 at 2255.299 kb on - strand, within PGA1_c21750 at 2255.382 kb on + strand, within PGA1_c21750 at 2255.400 kb on - strand, within PGA1_c21750 at 2255.505 kb on + strand, within PGA1_c21750 at 2255.564 kb on + strand, within PGA1_c21750 at 2255.564 kb on + strand, within PGA1_c21750 at 2255.572 kb on - strand, within PGA1_c21750 at 2255.572 kb on - strand, within PGA1_c21750 at 2255.577 kb on - strand, within PGA1_c21750 at 2255.676 kb on + strand at 2255.764 kb on + strand at 2255.764 kb on + strand at 2255.772 kb on - strand at 2255.796 kb on + strand at 2255.804 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.0125 mM remove 2,252,943 + +0.4 2,253,024 - -0.4 2,253,050 + +1.4 2,253,055 + +0.3 2,253,087 - +0.7 2,253,089 - +1.1 2,253,089 - -0.3 2,253,117 + -1.3 2,253,130 - -0.1 2,253,130 - -1.6 2,253,152 + -0.3 2,253,152 + +0.8 2,253,160 - -0.8 2,253,160 - -0.3 2,253,160 - +1.8 2,253,174 - -2.6 2,253,200 - -0.2 2,253,210 + +0.9 2,253,210 + -1.4 2,253,274 + PGA1_c21730 0.10 +0.9 2,253,361 - PGA1_c21730 0.25 +0.8 2,253,371 + PGA1_c21730 0.26 +0.9 2,253,372 - PGA1_c21730 0.26 -0.9 2,253,413 + PGA1_c21730 0.33 +0.3 2,253,418 + PGA1_c21730 0.34 +0.6 2,253,464 - PGA1_c21730 0.42 -0.1 2,253,496 - PGA1_c21730 0.47 +0.4 2,253,503 + PGA1_c21730 0.48 -0.6 2,253,519 - PGA1_c21730 0.51 +0.1 2,253,519 - PGA1_c21730 0.51 +2.8 2,253,529 - PGA1_c21730 0.52 -0.5 2,253,529 - PGA1_c21730 0.52 +1.4 2,253,529 - PGA1_c21730 0.52 -0.7 2,253,565 + PGA1_c21730 0.58 +0.7 2,253,573 - PGA1_c21730 0.60 -0.2 2,253,575 - PGA1_c21730 0.60 +0.2 2,253,575 - PGA1_c21730 0.60 -0.1 2,253,615 + PGA1_c21730 0.67 +0.4 2,253,655 - PGA1_c21730 0.73 +1.2 2,253,663 + PGA1_c21730 0.74 -0.7 2,253,673 + PGA1_c21730 0.76 -2.6 2,253,673 - PGA1_c21730 0.76 +1.2 2,253,722 + PGA1_c21730 0.84 +0.2 2,253,739 + PGA1_c21730 0.87 -0.6 2,253,747 - PGA1_c21730 0.88 -0.3 2,253,769 + +1.6 2,253,773 - +2.1 2,253,827 - +0.1 2,253,841 + -0.4 2,253,881 + -0.6 2,253,979 - -1.1 2,254,042 + PGA1_c21740 0.12 -0.1 2,254,074 + PGA1_c21740 0.16 -1.3 2,254,074 + PGA1_c21740 0.16 -1.2 2,254,099 + PGA1_c21740 0.19 +0.3 2,254,110 + PGA1_c21740 0.20 -1.9 2,254,244 - PGA1_c21740 0.35 +1.4 2,254,248 + PGA1_c21740 0.36 -0.6 2,254,280 + PGA1_c21740 0.39 -0.7 2,254,363 - PGA1_c21740 0.49 -0.6 2,254,404 - PGA1_c21740 0.53 +0.7 2,254,411 + PGA1_c21740 0.54 -0.3 2,254,485 + PGA1_c21740 0.62 -1.2 2,254,524 - -0.6 2,254,544 - PGA1_c21740 0.69 +0.0 2,254,561 - PGA1_c21740 0.71 -1.9 2,254,568 - PGA1_c21740 0.72 -0.7 2,254,592 + PGA1_c21740 0.75 -0.1 2,254,600 - PGA1_c21740 0.75 +0.1 2,254,622 + PGA1_c21740 0.78 +0.4 2,254,676 + PGA1_c21740 0.84 -2.4 2,254,725 + PGA1_c21740 0.90 +0.7 2,254,754 + -0.9 2,254,780 + -2.1 2,254,837 + +0.3 2,254,907 - +0.3 2,254,928 + +1.6 2,254,928 + -0.1 2,254,936 - PGA1_c21750 0.11 -0.5 2,254,939 + PGA1_c21750 0.11 +0.0 2,254,946 + PGA1_c21750 0.12 +0.5 2,254,966 + PGA1_c21750 0.14 -0.1 2,254,968 + PGA1_c21750 0.14 -0.1 2,254,986 + PGA1_c21750 0.16 -0.5 2,254,999 + PGA1_c21750 0.18 +0.3 2,255,001 + PGA1_c21750 0.18 -0.7 2,255,007 - PGA1_c21750 0.18 -0.1 2,255,007 - PGA1_c21750 0.18 +0.4 2,255,042 - PGA1_c21750 0.22 +0.4 2,255,097 - PGA1_c21750 0.28 +0.9 2,255,107 - PGA1_c21750 0.29 -0.5 2,255,139 + PGA1_c21750 0.33 +0.6 2,255,139 + PGA1_c21750 0.33 +0.9 2,255,147 - PGA1_c21750 0.34 +0.3 2,255,243 - PGA1_c21750 0.44 -0.9 2,255,243 - PGA1_c21750 0.44 -0.1 2,255,280 - PGA1_c21750 0.48 +0.8 2,255,290 + PGA1_c21750 0.49 -0.4 2,255,291 + PGA1_c21750 0.49 +0.7 2,255,299 - PGA1_c21750 0.50 -0.1 2,255,382 + PGA1_c21750 0.59 -1.3 2,255,400 - PGA1_c21750 0.61 +1.0 2,255,505 + PGA1_c21750 0.73 -1.6 2,255,564 + PGA1_c21750 0.79 +0.0 2,255,564 + PGA1_c21750 0.79 +0.5 2,255,572 - PGA1_c21750 0.80 +0.8 2,255,572 - PGA1_c21750 0.80 +0.0 2,255,577 - PGA1_c21750 0.80 +1.6 2,255,676 + +1.0 2,255,764 + +0.2 2,255,764 + +0.4 2,255,772 - -0.2 2,255,796 + +0.0 2,255,804 - -1.4
Or see this region's nucleotide sequence