Strain Fitness in Dechlorosoma suillum PS around Dsui_3470

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3468 and Dsui_3469 overlap by 4 nucleotidesDsui_3469 and Dsui_3470 are separated by 195 nucleotidesDsui_3470 and Dsui_3471 overlap by 4 nucleotides Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789 _3468 Dsui_3469: Dsui_3469 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,732,786 to 3,733,415 _3469 Dsui_3470: Dsui_3470 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,733,611 to 3,734,009 _3470 Dsui_3471: Dsui_3471 - methyl-accepting chemotaxis protein, at 3,734,006 to 3,735,151 _3471 Position (kb) 3733 3734 3735Strain fitness (log2 ratio) -3 -2 -1 0 1at 3732.627 kb on + strand, within Dsui_3468at 3732.643 kb on - strandat 3732.659 kb on - strandat 3732.665 kb on + strand, within Dsui_3468at 3732.900 kb on + strand, within Dsui_3469at 3732.970 kb on + strand, within Dsui_3469at 3733.063 kb on - strand, within Dsui_3469at 3733.324 kb on - strand, within Dsui_3469at 3733.386 kb on + strandat 3733.394 kb on - strandat 3733.542 kb on - strandat 3734.045 kb on - strandat 3734.045 kb on - strandat 3734.072 kb on - strandat 3734.137 kb on + strandat 3734.209 kb on + strandat 3734.279 kb on - strandat 3734.430 kb on + strandat 3734.430 kb on + strand, within Dsui_3471at 3734.703 kb on - strandat 3734.724 kb on + strand, within Dsui_3471at 3734.793 kb on + strandat 3734.807 kb on - strandat 3734.840 kb on + strand, within Dsui_3471

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,732,627 + Dsui_3468 0.86 -2.8
3,732,643 - +0.5
3,732,659 - +0.5
3,732,665 + Dsui_3468 0.89 -0.8
3,732,900 + Dsui_3469 0.18 -3.3
3,732,970 + Dsui_3469 0.29 -0.5
3,733,063 - Dsui_3469 0.44 -1.1
3,733,324 - Dsui_3469 0.85 -1.5
3,733,386 + +0.5
3,733,394 - +0.5
3,733,542 - +0.5
3,734,045 - +0.5
3,734,045 - +0.5
3,734,072 - +0.5
3,734,137 + +0.5
3,734,209 + -0.5
3,734,279 - +0.5
3,734,430 + +0.5
3,734,430 + Dsui_3471 0.37 -1.5
3,734,703 - -1.1
3,734,724 + Dsui_3471 0.63 -1.1
3,734,793 + +0.5
3,734,807 - +0.5
3,734,840 + Dsui_3471 0.73 -1.5

Or see this region's nucleotide sequence