Strain Fitness in Dechlorosoma suillum PS around Dsui_3468

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3467 and Dsui_3468 are separated by 94 nucleotidesDsui_3468 and Dsui_3469 overlap by 4 nucleotidesDsui_3469 and Dsui_3470 are separated by 195 nucleotides Dsui_3467: Dsui_3467 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,730,179 to 3,731,525 _3467 Dsui_3468: Dsui_3468 - Response regulator receiver domain protein,histidine kinase, at 3,731,620 to 3,732,789 _3468 Dsui_3469: Dsui_3469 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,732,786 to 3,733,415 _3469 Dsui_3470: Dsui_3470 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,733,611 to 3,734,009 _3470 Position (kb) 3731 3732 3733Strain fitness (log2 ratio) -3 -2 -1 0 1at 3730.680 kb on - strandat 3730.691 kb on + strandat 3730.783 kb on + strand, within Dsui_3467at 3730.887 kb on - strand, within Dsui_3467at 3730.948 kb on - strandat 3731.037 kb on - strandat 3731.084 kb on + strand, within Dsui_3467at 3731.110 kb on - strand, within Dsui_3467at 3731.115 kb on - strand, within Dsui_3467at 3731.728 kb on + strandat 3731.736 kb on - strandat 3731.844 kb on + strand, within Dsui_3468at 3731.852 kb on - strandat 3731.881 kb on + strand, within Dsui_3468at 3731.961 kb on + strand, within Dsui_3468at 3732.001 kb on - strandat 3732.307 kb on + strand, within Dsui_3468at 3732.315 kb on - strand, within Dsui_3468at 3732.409 kb on + strand, within Dsui_3468at 3732.513 kb on + strand, within Dsui_3468at 3732.545 kb on - strandat 3732.550 kb on - strand, within Dsui_3468at 3732.570 kb on + strand, within Dsui_3468at 3732.627 kb on + strand, within Dsui_3468at 3732.643 kb on - strandat 3732.659 kb on - strandat 3732.665 kb on + strand, within Dsui_3468at 3732.900 kb on + strand, within Dsui_3469at 3732.970 kb on + strand, within Dsui_3469at 3733.063 kb on - strand, within Dsui_3469at 3733.324 kb on - strand, within Dsui_3469at 3733.386 kb on + strandat 3733.394 kb on - strandat 3733.542 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,730,680 - -1.1
3,730,691 + +0.5
3,730,783 + Dsui_3467 0.45 -1.5
3,730,887 - Dsui_3467 0.53 -1.1
3,730,948 - +0.5
3,731,037 - +0.5
3,731,084 + Dsui_3467 0.67 +0.5
3,731,110 - Dsui_3467 0.69 -2.3
3,731,115 - Dsui_3467 0.69 +0.5
3,731,728 + -0.3
3,731,736 - -0.5
3,731,844 + Dsui_3468 0.19 -0.8
3,731,852 - +0.5
3,731,881 + Dsui_3468 0.22 -0.4
3,731,961 + Dsui_3468 0.29 -0.1
3,732,001 - +0.5
3,732,307 + Dsui_3468 0.59 -0.5
3,732,315 - Dsui_3468 0.59 -0.5
3,732,409 + Dsui_3468 0.67 -1.5
3,732,513 + Dsui_3468 0.76 -1.8
3,732,545 - -1.1
3,732,550 - Dsui_3468 0.79 -0.5
3,732,570 + Dsui_3468 0.81 -2.1
3,732,627 + Dsui_3468 0.86 -2.8
3,732,643 - +0.5
3,732,659 - +0.5
3,732,665 + Dsui_3468 0.89 -0.8
3,732,900 + Dsui_3469 0.18 -3.3
3,732,970 + Dsui_3469 0.29 -0.5
3,733,063 - Dsui_3469 0.44 -1.1
3,733,324 - Dsui_3469 0.85 -1.5
3,733,386 + +0.5
3,733,394 - +0.5
3,733,542 - +0.5

Or see this region's nucleotide sequence