Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3436 and Dsui_3437 overlap by 4 nucleotides Dsui_3437 and Dsui_3438 are separated by 13 nucleotides
Dsui_3436: Dsui_3436 - beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, at 3,689,338 to 3,690,228
_3436
Dsui_3437: Dsui_3437 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,690,225 to 3,693,257
_3437
Dsui_3438: Dsui_3438 - beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, at 3,693,271 to 3,694,170
_3438
Position (kb)
3690
3691
3692
3693
3694 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3689.282 kb on - strand at 3689.311 kb on + strand at 3689.372 kb on - strand at 3689.400 kb on - strand at 3689.433 kb on - strand, within Dsui_3436 at 3689.600 kb on - strand, within Dsui_3436 at 3689.838 kb on - strand, within Dsui_3436 at 3690.306 kb on + strand at 3690.364 kb on - strand at 3690.364 kb on - strand at 3690.458 kb on + strand at 3690.573 kb on + strand, within Dsui_3437 at 3690.681 kb on + strand, within Dsui_3437 at 3690.687 kb on + strand, within Dsui_3437 at 3690.739 kb on + strand at 3690.747 kb on - strand, within Dsui_3437 at 3690.837 kb on - strand, within Dsui_3437 at 3690.925 kb on + strand, within Dsui_3437 at 3691.018 kb on - strand, within Dsui_3437 at 3691.018 kb on - strand, within Dsui_3437 at 3691.149 kb on + strand, within Dsui_3437 at 3691.239 kb on + strand, within Dsui_3437 at 3691.378 kb on + strand, within Dsui_3437 at 3691.378 kb on + strand, within Dsui_3437 at 3691.406 kb on - strand, within Dsui_3437 at 3691.479 kb on - strand, within Dsui_3437 at 3691.514 kb on - strand, within Dsui_3437 at 3691.677 kb on + strand, within Dsui_3437 at 3691.683 kb on - strand, within Dsui_3437 at 3691.720 kb on + strand, within Dsui_3437 at 3691.847 kb on + strand, within Dsui_3437 at 3692.409 kb on - strand, within Dsui_3437 at 3692.487 kb on + strand at 3692.526 kb on - strand, within Dsui_3437 at 3692.545 kb on - strand, within Dsui_3437 at 3692.605 kb on - strand, within Dsui_3437 at 3692.669 kb on - strand, within Dsui_3437 at 3692.700 kb on - strand, within Dsui_3437 at 3692.736 kb on + strand at 3692.807 kb on - strand, within Dsui_3437 at 3692.870 kb on - strand, within Dsui_3437 at 3692.883 kb on - strand, within Dsui_3437 at 3693.188 kb on - strand at 3693.411 kb on + strand at 3693.541 kb on + strand, within Dsui_3438 at 3693.549 kb on - strand, within Dsui_3438 at 3693.618 kb on + strand at 3693.883 kb on - strand, within Dsui_3438 at 3693.943 kb on + strand, within Dsui_3438 at 3693.981 kb on + strand, within Dsui_3438 at 3694.106 kb on + strand at 3694.124 kb on - strand at 3694.151 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,689,282 - +0.5 3,689,311 + -2.1 3,689,372 - -0.5 3,689,400 - -0.5 3,689,433 - Dsui_3436 0.11 +0.3 3,689,600 - Dsui_3436 0.29 -0.2 3,689,838 - Dsui_3436 0.56 +0.4 3,690,306 + -0.5 3,690,364 - -1.3 3,690,364 - -0.8 3,690,458 + -2.1 3,690,573 + Dsui_3437 0.11 -3.0 3,690,681 + Dsui_3437 0.15 -1.8 3,690,687 + Dsui_3437 0.15 +0.5 3,690,739 + +0.5 3,690,747 - Dsui_3437 0.17 -0.7 3,690,837 - Dsui_3437 0.20 -0.5 3,690,925 + Dsui_3437 0.23 -1.8 3,691,018 - Dsui_3437 0.26 -0.2 3,691,018 - Dsui_3437 0.26 +0.7 3,691,149 + Dsui_3437 0.30 +0.5 3,691,239 + Dsui_3437 0.33 -1.1 3,691,378 + Dsui_3437 0.38 -1.8 3,691,378 + Dsui_3437 0.38 -2.3 3,691,406 - Dsui_3437 0.39 -1.0 3,691,479 - Dsui_3437 0.41 +1.1 3,691,514 - Dsui_3437 0.42 +0.0 3,691,677 + Dsui_3437 0.48 -0.5 3,691,683 - Dsui_3437 0.48 -0.1 3,691,720 + Dsui_3437 0.49 +0.5 3,691,847 + Dsui_3437 0.53 -1.3 3,692,409 - Dsui_3437 0.72 -0.1 3,692,487 + +0.5 3,692,526 - Dsui_3437 0.76 -0.3 3,692,545 - Dsui_3437 0.76 -0.2 3,692,605 - Dsui_3437 0.78 -0.0 3,692,669 - Dsui_3437 0.81 -0.6 3,692,700 - Dsui_3437 0.82 -0.1 3,692,736 + +0.5 3,692,807 - Dsui_3437 0.85 -0.5 3,692,870 - Dsui_3437 0.87 -0.1 3,692,883 - Dsui_3437 0.88 -0.6 3,693,188 - -0.1 3,693,411 + +0.5 3,693,541 + Dsui_3438 0.30 -2.5 3,693,549 - Dsui_3438 0.31 -0.2 3,693,618 + +0.5 3,693,883 - Dsui_3438 0.68 -0.2 3,693,943 + Dsui_3438 0.75 -1.1 3,693,981 + Dsui_3438 0.79 -2.3 3,694,106 + +0.5 3,694,124 - -0.1 3,694,151 - -0.3
Or see this region's nucleotide sequence