Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3331 and Dsui_3332 are separated by 205 nucleotides Dsui_3332 and Dsui_3333 are separated by 165 nucleotides Dsui_3333 and Dsui_3334 overlap by 4 nucleotides
Dsui_3331: Dsui_3331 - adenylosuccinate lyase, at 3,569,680 to 3,571,047
_3331
Dsui_3332: Dsui_3332 - glutathione S-transferase, at 3,571,253 to 3,571,861
_3332
Dsui_3333: Dsui_3333 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,572,027 to 3,573,034
_3333
Dsui_3334: Dsui_3334 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,573,031 to 3,575,670
_3334
Position (kb)
3572
3573
3574 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3571.111 kb on - strand at 3571.130 kb on + strand at 3571.166 kb on + strand at 3571.181 kb on + strand at 3571.181 kb on + strand at 3571.189 kb on - strand at 3571.218 kb on - strand at 3571.286 kb on - strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.301 kb on - strand at 3571.321 kb on + strand, within Dsui_3332 at 3571.366 kb on - strand, within Dsui_3332 at 3571.467 kb on + strand, within Dsui_3332 at 3571.530 kb on + strand, within Dsui_3332 at 3571.650 kb on + strand, within Dsui_3332 at 3571.690 kb on + strand, within Dsui_3332 at 3571.699 kb on - strand, within Dsui_3332 at 3571.732 kb on - strand at 3571.754 kb on - strand, within Dsui_3332 at 3571.832 kb on + strand at 3571.871 kb on - strand at 3571.923 kb on - strand at 3571.941 kb on - strand at 3571.946 kb on - strand at 3571.951 kb on + strand at 3571.970 kb on + strand at 3571.979 kb on - strand at 3571.989 kb on - strand at 3571.997 kb on + strand at 3571.997 kb on + strand at 3572.061 kb on + strand at 3572.097 kb on - strand at 3572.105 kb on - strand at 3572.118 kb on - strand at 3572.138 kb on + strand, within Dsui_3333 at 3572.138 kb on + strand, within Dsui_3333 at 3572.173 kb on + strand, within Dsui_3333 at 3572.244 kb on + strand, within Dsui_3333 at 3572.262 kb on - strand, within Dsui_3333 at 3572.286 kb on + strand, within Dsui_3333 at 3572.294 kb on - strand, within Dsui_3333 at 3572.315 kb on + strand, within Dsui_3333 at 3572.724 kb on - strand, within Dsui_3333 at 3572.851 kb on + strand, within Dsui_3333 at 3572.896 kb on + strand, within Dsui_3333 at 3573.029 kb on + strand at 3573.067 kb on + strand at 3573.115 kb on - strand at 3573.338 kb on + strand, within Dsui_3334 at 3573.458 kb on - strand at 3573.652 kb on + strand, within Dsui_3334 at 3573.660 kb on + strand, within Dsui_3334 at 3573.668 kb on - strand, within Dsui_3334 at 3573.676 kb on - strand at 3573.729 kb on - strand, within Dsui_3334 at 3573.762 kb on + strand, within Dsui_3334 at 3573.774 kb on - strand at 3573.829 kb on + strand, within Dsui_3334 at 3573.926 kb on + strand, within Dsui_3334 at 3573.934 kb on - strand, within Dsui_3334 at 3573.975 kb on + strand, within Dsui_3334 at 3574.031 kb on - strand, within Dsui_3334
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,571,111 - +0.5 3,571,130 + +0.5 3,571,166 + +0.5 3,571,181 + +0.5 3,571,181 + -0.5 3,571,189 - +0.5 3,571,218 - -2.1 3,571,286 - +0.5 3,571,293 + -0.1 3,571,293 + -0.5 3,571,293 + -0.1 3,571,301 - +0.5 3,571,321 + Dsui_3332 0.11 -0.2 3,571,366 - Dsui_3332 0.19 -1.8 3,571,467 + Dsui_3332 0.35 -0.5 3,571,530 + Dsui_3332 0.45 +0.9 3,571,650 + Dsui_3332 0.65 -0.1 3,571,690 + Dsui_3332 0.72 -0.0 3,571,699 - Dsui_3332 0.73 -0.5 3,571,732 - +0.5 3,571,754 - Dsui_3332 0.82 +0.5 3,571,832 + -0.1 3,571,871 - -1.1 3,571,923 - -1.1 3,571,941 - -0.5 3,571,946 - +0.5 3,571,951 + +0.5 3,571,970 + +0.5 3,571,979 - +0.5 3,571,989 - -0.5 3,571,997 + -0.7 3,571,997 + -0.4 3,572,061 + -0.6 3,572,097 - -2.5 3,572,105 - -1.5 3,572,118 - +0.5 3,572,138 + Dsui_3333 0.11 -1.8 3,572,138 + Dsui_3333 0.11 -0.3 3,572,173 + Dsui_3333 0.14 -2.1 3,572,244 + Dsui_3333 0.22 -0.1 3,572,262 - Dsui_3333 0.23 +0.5 3,572,286 + Dsui_3333 0.26 -1.1 3,572,294 - Dsui_3333 0.26 -1.1 3,572,315 + Dsui_3333 0.29 -0.5 3,572,724 - Dsui_3333 0.69 +0.5 3,572,851 + Dsui_3333 0.82 -1.8 3,572,896 + Dsui_3333 0.86 -1.5 3,573,029 + +0.5 3,573,067 + -0.5 3,573,115 - -0.5 3,573,338 + Dsui_3334 0.12 -3.1 3,573,458 - -1.1 3,573,652 + Dsui_3334 0.24 -1.5 3,573,660 + Dsui_3334 0.24 -2.5 3,573,668 - Dsui_3334 0.24 -0.5 3,573,676 - +0.5 3,573,729 - Dsui_3334 0.26 -1.1 3,573,762 + Dsui_3334 0.28 -1.1 3,573,774 - +0.5 3,573,829 + Dsui_3334 0.30 -2.1 3,573,926 + Dsui_3334 0.34 +0.5 3,573,934 - Dsui_3334 0.34 +0.5 3,573,975 + Dsui_3334 0.36 -0.5 3,574,031 - Dsui_3334 0.38 -1.5
Or see this region's nucleotide sequence