Strain Fitness in Dechlorosoma suillum PS around Dsui_3213

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3212 and Dsui_3213 are separated by 330 nucleotidesDsui_3213 and Dsui_3214 are separated by 125 nucleotides Dsui_3212: Dsui_3212 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,446,689 to 3,448,356 _3212 Dsui_3213: Dsui_3213 - CBS domain-containing protein, at 3,448,687 to 3,449,136 _3213 Dsui_3214: Dsui_3214 - ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing, at 3,449,262 to 3,452,603 _3214 Position (kb) 3448 3449 3450Strain fitness (log2 ratio) -3 -2 -1 0 1at 3447.770 kb on + strandat 3447.783 kb on - strand, within Dsui_3212at 3447.799 kb on - strand, within Dsui_3212at 3447.852 kb on + strand, within Dsui_3212at 3447.860 kb on - strand, within Dsui_3212at 3447.937 kb on + strand, within Dsui_3212at 3447.945 kb on - strand, within Dsui_3212at 3447.948 kb on + strand, within Dsui_3212at 3447.956 kb on - strand, within Dsui_3212at 3448.039 kb on - strand, within Dsui_3212at 3448.056 kb on - strand, within Dsui_3212at 3448.061 kb on - strand, within Dsui_3212at 3448.084 kb on - strand, within Dsui_3212at 3448.102 kb on - strand, within Dsui_3212at 3448.120 kb on - strand, within Dsui_3212at 3448.144 kb on - strand, within Dsui_3212at 3448.202 kb on + strandat 3448.252 kb on - strandat 3448.254 kb on + strandat 3448.256 kb on + strandat 3448.259 kb on - strandat 3448.264 kb on - strandat 3448.366 kb on - strandat 3448.421 kb on - strandat 3448.472 kb on + strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.603 kb on - strandat 3448.690 kb on + strandat 3448.809 kb on - strand, within Dsui_3213at 3448.900 kb on - strand, within Dsui_3213at 3449.065 kb on + strandat 3449.065 kb on + strandat 3449.087 kb on + strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.183 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
3,447,770 + -0.6
3,447,783 - Dsui_3212 0.66 +0.7
3,447,799 - Dsui_3212 0.67 -0.4
3,447,852 + Dsui_3212 0.70 -1.2
3,447,860 - Dsui_3212 0.70 +0.1
3,447,937 + Dsui_3212 0.75 -0.6
3,447,945 - Dsui_3212 0.75 -0.7
3,447,948 + Dsui_3212 0.75 -3.2
3,447,956 - Dsui_3212 0.76 -0.0
3,448,039 - Dsui_3212 0.81 -0.2
3,448,056 - Dsui_3212 0.82 -0.2
3,448,061 - Dsui_3212 0.82 -0.2
3,448,084 - Dsui_3212 0.84 -0.2
3,448,102 - Dsui_3212 0.85 +0.2
3,448,120 - Dsui_3212 0.86 +0.2
3,448,144 - Dsui_3212 0.87 +0.0
3,448,202 + -0.6
3,448,252 - +0.2
3,448,254 + -1.6
3,448,256 + -1.2
3,448,259 - +0.0
3,448,264 - +0.1
3,448,366 - -0.5
3,448,421 - -0.1
3,448,472 + -0.6
3,448,480 - -0.6
3,448,480 - -0.6
3,448,480 - +0.4
3,448,480 - +0.4
3,448,480 - +0.4
3,448,603 - -0.6
3,448,690 + -1.6
3,448,809 - Dsui_3213 0.27 -0.9
3,448,900 - Dsui_3213 0.47 -1.3
3,449,065 + +0.4
3,449,065 + -0.6
3,449,087 + -1.6
3,449,095 - -1.5
3,449,095 - -1.6
3,449,095 - -1.9
3,449,095 - -1.3
3,449,183 - -0.7

Or see this region's nucleotide sequence