Strain Fitness in Dechlorosoma suillum PS around Dsui_3019

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3018 and Dsui_3019 are separated by 9 nucleotidesDsui_3019 and Dsui_3020 are separated by 22 nucleotidesDsui_3020 and Dsui_3021 are separated by 57 nucleotides Dsui_3018: Dsui_3018 - OAH/OAS sulfhydrylase, at 3,231,337 to 3,232,638 _3018 Dsui_3019: Dsui_3019 - putative hydrolase or acyltransferase of alpha/beta superfamily, at 3,232,648 to 3,233,433 _3019 Dsui_3020: Dsui_3020 - Protein of unknown function (DUF3124), at 3,233,456 to 3,233,968 _3020 Dsui_3021: Dsui_3021 - putative permease, DMT superfamily, at 3,234,026 to 3,234,913 _3021 Position (kb) 3232 3233 3234Strain fitness (log2 ratio) -3 -2 -1 0 1at 3231.698 kb on + strand, within Dsui_3018at 3231.743 kb on + strand, within Dsui_3018at 3231.805 kb on + strand, within Dsui_3018at 3231.823 kb on - strand, within Dsui_3018at 3231.905 kb on + strand, within Dsui_3018at 3231.908 kb on - strandat 3231.913 kb on - strand, within Dsui_3018at 3231.913 kb on - strand, within Dsui_3018at 3231.913 kb on - strandat 3231.915 kb on + strand, within Dsui_3018at 3231.943 kb on - strandat 3231.954 kb on - strandat 3232.003 kb on + strand, within Dsui_3018at 3232.080 kb on - strandat 3232.218 kb on + strand, within Dsui_3018at 3232.380 kb on + strand, within Dsui_3018at 3232.433 kb on + strand, within Dsui_3018at 3232.505 kb on - strandat 3232.515 kb on + strandat 3232.759 kb on + strand, within Dsui_3019at 3233.019 kb on + strand, within Dsui_3019at 3233.027 kb on - strand, within Dsui_3019at 3233.040 kb on + strand, within Dsui_3019at 3233.048 kb on - strand, within Dsui_3019at 3233.048 kb on - strand, within Dsui_3019at 3233.216 kb on + strand, within Dsui_3019at 3233.239 kb on + strand, within Dsui_3019at 3233.427 kb on + strandat 3233.435 kb on - strandat 3233.435 kb on - strandat 3233.493 kb on - strandat 3233.596 kb on + strand, within Dsui_3020at 3233.663 kb on + strand, within Dsui_3020at 3233.671 kb on - strand, within Dsui_3020at 3233.793 kb on + strand, within Dsui_3020at 3233.890 kb on + strand, within Dsui_3020at 3233.914 kb on + strand, within Dsui_3020at 3233.914 kb on + strand, within Dsui_3020at 3234.166 kb on + strand, within Dsui_3021at 3234.166 kb on + strandat 3234.166 kb on + strand, within Dsui_3021at 3234.180 kb on - strand, within Dsui_3021at 3234.217 kb on - strand, within Dsui_3021at 3234.253 kb on + strand, within Dsui_3021at 3234.266 kb on + strand, within Dsui_3021at 3234.371 kb on + strand, within Dsui_3021at 3234.383 kb on + strandat 3234.421 kb on - strand, within Dsui_3021at 3234.421 kb on - strand, within Dsui_3021at 3234.428 kb on + strand, within Dsui_3021

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,231,698 + Dsui_3018 0.28 -0.4
3,231,743 + Dsui_3018 0.31 +0.4
3,231,805 + Dsui_3018 0.36 -1.8
3,231,823 - Dsui_3018 0.37 -1.8
3,231,905 + Dsui_3018 0.44 -0.3
3,231,908 - -0.5
3,231,913 - Dsui_3018 0.44 -1.1
3,231,913 - Dsui_3018 0.44 -0.5
3,231,913 - +0.5
3,231,915 + Dsui_3018 0.44 +0.9
3,231,943 - +0.5
3,231,954 - +0.5
3,232,003 + Dsui_3018 0.51 +0.1
3,232,080 - +0.5
3,232,218 + Dsui_3018 0.68 -0.9
3,232,380 + Dsui_3018 0.80 -2.6
3,232,433 + Dsui_3018 0.84 -0.9
3,232,505 - +0.5
3,232,515 + -0.0
3,232,759 + Dsui_3019 0.14 -0.5
3,233,019 + Dsui_3019 0.47 -1.3
3,233,027 - Dsui_3019 0.48 -1.5
3,233,040 + Dsui_3019 0.50 -0.4
3,233,048 - Dsui_3019 0.51 -1.5
3,233,048 - Dsui_3019 0.51 -1.1
3,233,216 + Dsui_3019 0.72 -0.1
3,233,239 + Dsui_3019 0.75 -0.3
3,233,427 + -1.1
3,233,435 - +0.5
3,233,435 - +0.5
3,233,493 - -1.5
3,233,596 + Dsui_3020 0.27 +0.0
3,233,663 + Dsui_3020 0.40 -0.0
3,233,671 - Dsui_3020 0.42 -3.5
3,233,793 + Dsui_3020 0.66 -0.1
3,233,890 + Dsui_3020 0.85 +0.3
3,233,914 + Dsui_3020 0.89 +0.4
3,233,914 + Dsui_3020 0.89 -0.8
3,234,166 + Dsui_3021 0.16 -1.1
3,234,166 + +0.5
3,234,166 + Dsui_3021 0.16 -1.1
3,234,180 - Dsui_3021 0.17 -0.2
3,234,217 - Dsui_3021 0.22 +0.1
3,234,253 + Dsui_3021 0.26 -2.1
3,234,266 + Dsui_3021 0.27 -0.5
3,234,371 + Dsui_3021 0.39 -0.5
3,234,383 + +0.5
3,234,421 - Dsui_3021 0.44 +0.5
3,234,421 - Dsui_3021 0.44 -2.1
3,234,428 + Dsui_3021 0.45 -1.5

Or see this region's nucleotide sequence