Strain Fitness in Dechlorosoma suillum PS around Dsui_2647

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2646 and Dsui_2647 are separated by 0 nucleotidesDsui_2647 and Dsui_2648 are separated by 17 nucleotides Dsui_2646: Dsui_2646 - AAA+ family ATPase, at 2,798,273 to 2,799,445 _2646 Dsui_2647: Dsui_2647 - subtilisin-like serine protease, at 2,799,446 to 2,801,671 _2647 Dsui_2648: Dsui_2648 - site-specific recombinase XerD, at 2,801,689 to 2,802,972 _2648 Position (kb) 2799 2800 2801 2802Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2799.428 kb on + strandat 2799.484 kb on + strandat 2799.487 kb on - strandat 2799.493 kb on - strandat 2799.507 kb on + strandat 2799.532 kb on + strandat 2799.534 kb on + strandat 2799.534 kb on - strandat 2799.550 kb on + strandat 2799.616 kb on + strandat 2799.624 kb on - strandat 2799.624 kb on - strandat 2799.650 kb on + strandat 2799.650 kb on + strandat 2799.655 kb on + strandat 2799.668 kb on - strandat 2799.711 kb on + strand, within Dsui_2647at 2799.741 kb on + strand, within Dsui_2647at 2799.769 kb on - strandat 2799.785 kb on + strand, within Dsui_2647at 2799.835 kb on - strand, within Dsui_2647at 2800.034 kb on + strand, within Dsui_2647at 2800.042 kb on - strand, within Dsui_2647at 2800.140 kb on + strand, within Dsui_2647at 2800.145 kb on + strand, within Dsui_2647at 2800.388 kb on - strand, within Dsui_2647at 2800.465 kb on - strand, within Dsui_2647at 2800.493 kb on + strand, within Dsui_2647at 2800.528 kb on + strand, within Dsui_2647at 2800.528 kb on + strand, within Dsui_2647at 2800.615 kb on + strand, within Dsui_2647at 2800.615 kb on + strand, within Dsui_2647at 2800.615 kb on + strand, within Dsui_2647at 2800.623 kb on - strand, within Dsui_2647at 2800.623 kb on - strand, within Dsui_2647at 2800.652 kb on + strand, within Dsui_2647at 2800.669 kb on - strand, within Dsui_2647at 2800.710 kb on + strand, within Dsui_2647at 2800.807 kb on - strand, within Dsui_2647at 2800.995 kb on + strand, within Dsui_2647at 2800.998 kb on - strand, within Dsui_2647at 2801.030 kb on + strand, within Dsui_2647at 2801.183 kb on + strand, within Dsui_2647at 2801.314 kb on + strand, within Dsui_2647at 2801.334 kb on - strand, within Dsui_2647at 2801.416 kb on - strand, within Dsui_2647at 2801.476 kb on + strandat 2801.488 kb on + strandat 2801.550 kb on + strandat 2801.550 kb on + strandat 2801.603 kb on + strandat 2801.610 kb on + strandat 2801.667 kb on + strandat 2801.709 kb on + strandat 2801.858 kb on + strand, within Dsui_2648at 2801.860 kb on + strand, within Dsui_2648at 2801.946 kb on + strand, within Dsui_2648at 2801.954 kb on - strand, within Dsui_2648at 2802.028 kb on - strand, within Dsui_2648at 2802.151 kb on - strandat 2802.204 kb on - strand, within Dsui_2648at 2802.260 kb on + strand, within Dsui_2648at 2802.269 kb on + strand, within Dsui_2648at 2802.295 kb on + strand, within Dsui_2648at 2802.305 kb on + strand, within Dsui_2648at 2802.313 kb on - strand, within Dsui_2648at 2802.314 kb on + strand, within Dsui_2648at 2802.428 kb on + strand, within Dsui_2648at 2802.441 kb on - strand, within Dsui_2648at 2802.453 kb on + strand, within Dsui_2648at 2802.499 kb on - strand, within Dsui_2648at 2802.569 kb on + strand, within Dsui_2648at 2802.579 kb on + strand, within Dsui_2648at 2802.587 kb on - strand, within Dsui_2648at 2802.646 kb on + strand, within Dsui_2648

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,799,428 + -2.4
2,799,484 + -0.4
2,799,487 - -0.4
2,799,493 - -1.0
2,799,507 + -1.0
2,799,532 + -1.9
2,799,534 + -0.4
2,799,534 - +0.6
2,799,550 + +0.6
2,799,616 + -1.0
2,799,624 - -1.4
2,799,624 - +0.6
2,799,650 + -1.4
2,799,650 + -1.8
2,799,655 + -2.6
2,799,668 - -0.4
2,799,711 + Dsui_2647 0.12 -1.0
2,799,741 + Dsui_2647 0.13 -1.4
2,799,769 - +0.6
2,799,785 + Dsui_2647 0.15 +0.1
2,799,835 - Dsui_2647 0.17 +0.6
2,800,034 + Dsui_2647 0.26 +0.6
2,800,042 - Dsui_2647 0.27 +0.6
2,800,140 + Dsui_2647 0.31 -3.3
2,800,145 + Dsui_2647 0.31 -1.0
2,800,388 - Dsui_2647 0.42 -1.0
2,800,465 - Dsui_2647 0.46 +0.6
2,800,493 + Dsui_2647 0.47 -0.4
2,800,528 + Dsui_2647 0.49 +2.6
2,800,528 + Dsui_2647 0.49 +1.6
2,800,615 + Dsui_2647 0.53 +0.6
2,800,615 + Dsui_2647 0.53 +0.6
2,800,615 + Dsui_2647 0.53 -1.0
2,800,623 - Dsui_2647 0.53 -0.4
2,800,623 - Dsui_2647 0.53 +0.6
2,800,652 + Dsui_2647 0.54 -1.0
2,800,669 - Dsui_2647 0.55 +0.6
2,800,710 + Dsui_2647 0.57 +0.6
2,800,807 - Dsui_2647 0.61 +0.6
2,800,995 + Dsui_2647 0.70 -2.3
2,800,998 - Dsui_2647 0.70 -1.0
2,801,030 + Dsui_2647 0.71 -1.6
2,801,183 + Dsui_2647 0.78 -1.0
2,801,314 + Dsui_2647 0.84 -1.8
2,801,334 - Dsui_2647 0.85 -0.4
2,801,416 - Dsui_2647 0.88 -0.4
2,801,476 + +0.6
2,801,488 + -0.0
2,801,550 + +0.6
2,801,550 + +2.1
2,801,603 + -0.4
2,801,610 + -1.1
2,801,667 + -1.8
2,801,709 + -2.6
2,801,858 + Dsui_2648 0.13 -0.4
2,801,860 + Dsui_2648 0.13 -0.4
2,801,946 + Dsui_2648 0.20 +1.1
2,801,954 - Dsui_2648 0.21 -1.8
2,802,028 - Dsui_2648 0.26 +0.6
2,802,151 - +0.6
2,802,204 - Dsui_2648 0.40 -0.4
2,802,260 + Dsui_2648 0.44 -0.4
2,802,269 + Dsui_2648 0.45 -1.4
2,802,295 + Dsui_2648 0.47 +0.6
2,802,305 + Dsui_2648 0.48 +0.6
2,802,313 - Dsui_2648 0.49 +0.6
2,802,314 + Dsui_2648 0.49 -2.0
2,802,428 + Dsui_2648 0.58 -1.8
2,802,441 - Dsui_2648 0.59 +0.6
2,802,453 + Dsui_2648 0.60 -1.8
2,802,499 - Dsui_2648 0.63 -1.4
2,802,569 + Dsui_2648 0.69 -0.9
2,802,579 + Dsui_2648 0.69 -0.4
2,802,587 - Dsui_2648 0.70 +0.6
2,802,646 + Dsui_2648 0.75 +1.6

Or see this region's nucleotide sequence