Strain Fitness in Dechlorosoma suillum PS around Dsui_2228

Experiment: D,L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2226 and Dsui_2227 are separated by 33 nucleotidesDsui_2227 and Dsui_2228 are separated by 75 nucleotidesDsui_2228 and Dsui_2229 are separated by 70 nucleotides Dsui_2226: Dsui_2226 - DNA-binding domain-containing protein, AraC-type, at 2,367,297 to 2,368,181 _2226 Dsui_2227: Dsui_2227 - NADH-quinone oxidoreductase, B subunit, at 2,368,215 to 2,368,736 _2227 Dsui_2228: Dsui_2228 - Zn-dependent alcohol dehydrogenase, at 2,368,812 to 2,369,834 _2228 Dsui_2229: Dsui_2229 - transcriptional regulator, at 2,369,905 to 2,370,780 _2229 Position (kb) 2368 2369 2370Strain fitness (log2 ratio) -2 -1 0 1at 2367.839 kb on - strandat 2367.840 kb on - strandat 2367.872 kb on - strandat 2368.092 kb on - strandat 2368.123 kb on + strandat 2368.225 kb on + strandat 2368.225 kb on + strandat 2368.284 kb on - strandat 2368.424 kb on - strand, within Dsui_2227at 2368.508 kb on + strandat 2368.544 kb on + strandat 2368.550 kb on + strandat 2368.563 kb on + strand, within Dsui_2227at 2368.797 kb on - strandat 2368.797 kb on - strandat 2368.849 kb on + strandat 2368.894 kb on + strandat 2368.894 kb on + strandat 2368.894 kb on + strandat 2368.902 kb on - strandat 2368.902 kb on - strandat 2368.975 kb on - strand, within Dsui_2228at 2368.992 kb on - strandat 2369.084 kb on - strandat 2369.142 kb on - strandat 2369.142 kb on - strandat 2369.222 kb on + strandat 2369.260 kb on + strandat 2369.299 kb on - strand, within Dsui_2228at 2369.356 kb on + strandat 2369.356 kb on - strand, within Dsui_2228at 2369.356 kb on - strand, within Dsui_2228at 2369.356 kb on - strand, within Dsui_2228at 2369.357 kb on + strand, within Dsui_2228at 2369.358 kb on + strandat 2369.358 kb on + strandat 2369.366 kb on - strand, within Dsui_2228at 2369.374 kb on - strandat 2369.413 kb on + strandat 2369.416 kb on + strandat 2369.477 kb on + strandat 2369.485 kb on - strandat 2369.524 kb on + strandat 2369.606 kb on - strandat 2369.636 kb on + strandat 2369.668 kb on - strandat 2369.736 kb on - strandat 2369.736 kb on - strandat 2369.738 kb on + strandat 2369.738 kb on + strandat 2370.078 kb on + strandat 2370.078 kb on + strandat 2370.110 kb on + strandat 2370.118 kb on - strand, within Dsui_2229at 2370.118 kb on - strand, within Dsui_2229at 2370.118 kb on - strand, within Dsui_2229at 2370.163 kb on - strand, within Dsui_2229at 2370.168 kb on - strand, within Dsui_2229at 2370.284 kb on - strand, within Dsui_2229at 2370.292 kb on - strandat 2370.396 kb on - strand, within Dsui_2229at 2370.401 kb on - strand, within Dsui_2229at 2370.484 kb on + strandat 2370.510 kb on - strand, within Dsui_2229at 2370.515 kb on - strand, within Dsui_2229at 2370.625 kb on - strand, within Dsui_2229at 2370.642 kb on - strand, within Dsui_2229at 2370.672 kb on - strand, within Dsui_2229at 2370.672 kb on - strand, within Dsui_2229at 2370.691 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
remove
2,367,839 - +0.6
2,367,840 - +0.6
2,367,872 - -1.0
2,368,092 - +0.6
2,368,123 + -0.4
2,368,225 + -0.4
2,368,225 + -0.4
2,368,284 - +0.6
2,368,424 - Dsui_2227 0.40 +1.6
2,368,508 + +1.6
2,368,544 + +0.6
2,368,550 + +1.6
2,368,563 + Dsui_2227 0.67 -1.4
2,368,797 - -1.0
2,368,797 - -1.4
2,368,849 + -0.4
2,368,894 + +0.6
2,368,894 + +0.6
2,368,894 + -0.4
2,368,902 - +0.6
2,368,902 - -0.4
2,368,975 - Dsui_2228 0.16 -1.4
2,368,992 - +0.6
2,369,084 - +0.6
2,369,142 - +0.6
2,369,142 - +0.6
2,369,222 + +0.6
2,369,260 + -0.4
2,369,299 - Dsui_2228 0.48 -0.4
2,369,356 + -0.4
2,369,356 - Dsui_2228 0.53 +0.6
2,369,356 - Dsui_2228 0.53 -1.4
2,369,356 - Dsui_2228 0.53 -0.4
2,369,357 + Dsui_2228 0.53 -1.7
2,369,358 + -0.4
2,369,358 + -1.7
2,369,366 - Dsui_2228 0.54 -1.4
2,369,374 - +0.6
2,369,413 + +0.6
2,369,416 + -0.4
2,369,477 + +0.6
2,369,485 - +0.6
2,369,524 + -0.4
2,369,606 - -1.0
2,369,636 + +0.6
2,369,668 - +0.6
2,369,736 - +0.6
2,369,736 - +0.6
2,369,738 + -1.0
2,369,738 + -0.4
2,370,078 + +0.6
2,370,078 + +0.6
2,370,110 + +0.6
2,370,118 - Dsui_2229 0.24 -0.1
2,370,118 - Dsui_2229 0.24 +0.0
2,370,118 - Dsui_2229 0.24 +0.9
2,370,163 - Dsui_2229 0.29 -2.7
2,370,168 - Dsui_2229 0.30 -1.2
2,370,284 - Dsui_2229 0.43 -0.6
2,370,292 - -0.4
2,370,396 - Dsui_2229 0.56 +0.2
2,370,401 - Dsui_2229 0.57 -1.4
2,370,484 + -0.4
2,370,510 - Dsui_2229 0.69 -0.9
2,370,515 - Dsui_2229 0.70 -0.9
2,370,625 - Dsui_2229 0.82 -0.8
2,370,642 - Dsui_2229 0.84 -0.4
2,370,672 - Dsui_2229 0.88 +0.2
2,370,672 - Dsui_2229 0.88 -2.2
2,370,691 + -1.0

Or see this region's nucleotide sequence