Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2128 and Dsui_2129 are separated by 84 nucleotides Dsui_2129 and Dsui_2130 are separated by 299 nucleotides Dsui_2130 and Dsui_2131 are separated by 352 nucleotides Dsui_2131 and Dsui_2132 are separated by 150 nucleotides Dsui_2132 and Dsui_2133 are separated by 105 nucleotides Dsui_2133 and Dsui_2134 are separated by 82 nucleotides
Dsui_2128: Dsui_2128 - uncharacterized protein involved in outer membrane biogenesis, at 2,256,574 to 2,259,795
_2128
Dsui_2129: Dsui_2129 - bacterial nucleoid DNA-binding protein, at 2,259,880 to 2,260,164
_2129
Dsui_2130: Dsui_2130 - outer membrane receptor for ferrienterochelin and colicins, at 2,260,464 to 2,262,713
_2130
Dsui_2131: Dsui_2131 - tRNA-Arg, at 2,263,066 to 2,263,142
_2131
Dsui_2132: Dsui_2132 - tRNA-Arg, at 2,263,293 to 2,263,369
_2132
Dsui_2133: Dsui_2133 - tRNA-Ser, at 2,263,475 to 2,263,568
_2133
Dsui_2134: Dsui_2134 - aspartate kinase, monofunctional class, at 2,263,651 to 2,264,874
_2134
Position (kb)
2260
2261
2262
2263 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2259.473 kb on + strand at 2259.485 kb on + strand at 2259.506 kb on + strand at 2259.514 kb on - strand at 2259.565 kb on + strand at 2259.596 kb on + strand at 2259.625 kb on + strand at 2259.672 kb on + strand at 2259.685 kb on - strand at 2259.690 kb on + strand at 2259.804 kb on - strand at 2260.248 kb on - strand at 2260.270 kb on + strand at 2260.515 kb on + strand at 2260.523 kb on - strand at 2260.523 kb on - strand at 2260.633 kb on + strand at 2260.694 kb on - strand, within Dsui_2130 at 2260.762 kb on + strand at 2260.777 kb on - strand, within Dsui_2130 at 2260.787 kb on - strand, within Dsui_2130 at 2260.955 kb on - strand, within Dsui_2130 at 2260.955 kb on - strand, within Dsui_2130 at 2261.058 kb on - strand, within Dsui_2130 at 2261.182 kb on + strand at 2261.236 kb on - strand, within Dsui_2130 at 2261.385 kb on + strand, within Dsui_2130 at 2261.457 kb on - strand, within Dsui_2130 at 2261.457 kb on - strand, within Dsui_2130 at 2261.467 kb on + strand, within Dsui_2130 at 2261.543 kb on - strand, within Dsui_2130 at 2261.561 kb on - strand, within Dsui_2130 at 2261.569 kb on + strand, within Dsui_2130 at 2261.584 kb on - strand, within Dsui_2130 at 2261.639 kb on - strand, within Dsui_2130 at 2261.669 kb on - strand, within Dsui_2130 at 2261.782 kb on + strand, within Dsui_2130 at 2261.830 kb on - strand, within Dsui_2130 at 2261.836 kb on + strand, within Dsui_2130 at 2261.890 kb on + strand, within Dsui_2130 at 2261.938 kb on + strand, within Dsui_2130 at 2262.059 kb on - strand, within Dsui_2130 at 2262.125 kb on - strand, within Dsui_2130 at 2262.190 kb on - strand, within Dsui_2130 at 2262.292 kb on + strand, within Dsui_2130 at 2262.352 kb on - strand, within Dsui_2130 at 2262.371 kb on - strand, within Dsui_2130 at 2262.483 kb on + strand, within Dsui_2130 at 2262.516 kb on + strand at 2262.524 kb on - strand at 2262.633 kb on + strand at 2262.670 kb on - strand at 2262.681 kb on + strand at 2262.822 kb on + strand at 2262.829 kb on + strand at 2262.891 kb on + strand at 2263.128 kb on - strand, within Dsui_2131 at 2263.130 kb on - strand, within Dsui_2131 at 2263.190 kb on - strand at 2263.610 kb on - strand at 2263.611 kb on - strand at 2263.649 kb on + strand at 2263.649 kb on + strand at 2263.657 kb on - strand at 2263.657 kb on - strand at 2263.657 kb on - strand at 2263.660 kb on + strand at 2263.662 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,259,473 + -0.3 2,259,485 + -0.6 2,259,506 + -1.3 2,259,514 - -2.3 2,259,565 + -2.7 2,259,596 + -1.7 2,259,625 + -2.7 2,259,672 + -1.2 2,259,685 - -0.9 2,259,690 + -2.8 2,259,804 - +0.7 2,260,248 - -0.9 2,260,270 + +1.2 2,260,515 + -1.4 2,260,523 - +0.6 2,260,523 - -0.4 2,260,633 + -0.9 2,260,694 - Dsui_2130 0.10 -1.7 2,260,762 + -0.4 2,260,777 - Dsui_2130 0.14 -0.9 2,260,787 - Dsui_2130 0.14 -2.7 2,260,955 - Dsui_2130 0.22 -1.4 2,260,955 - Dsui_2130 0.22 -0.9 2,261,058 - Dsui_2130 0.26 +0.6 2,261,182 + +0.6 2,261,236 - Dsui_2130 0.34 -0.4 2,261,385 + Dsui_2130 0.41 +0.6 2,261,457 - Dsui_2130 0.44 -0.4 2,261,457 - Dsui_2130 0.44 -0.4 2,261,467 + Dsui_2130 0.45 +0.6 2,261,543 - Dsui_2130 0.48 -0.9 2,261,561 - Dsui_2130 0.49 -1.4 2,261,569 + Dsui_2130 0.49 -1.7 2,261,584 - Dsui_2130 0.50 +0.6 2,261,639 - Dsui_2130 0.52 +1.6 2,261,669 - Dsui_2130 0.54 -0.9 2,261,782 + Dsui_2130 0.59 +0.6 2,261,830 - Dsui_2130 0.61 +0.6 2,261,836 + Dsui_2130 0.61 -0.4 2,261,890 + Dsui_2130 0.63 -1.4 2,261,938 + Dsui_2130 0.66 -0.9 2,262,059 - Dsui_2130 0.71 -0.4 2,262,125 - Dsui_2130 0.74 -2.8 2,262,190 - Dsui_2130 0.77 -1.9 2,262,292 + Dsui_2130 0.81 -0.4 2,262,352 - Dsui_2130 0.84 +0.7 2,262,371 - Dsui_2130 0.85 +0.2 2,262,483 + Dsui_2130 0.90 +0.7 2,262,516 + +0.7 2,262,524 - -1.3 2,262,633 + -1.9 2,262,670 - -0.3 2,262,681 + -0.3 2,262,822 + +0.7 2,262,829 + -0.9 2,262,891 + -0.9 2,263,128 - Dsui_2131 0.81 +0.2 2,263,130 - Dsui_2131 0.83 +0.2 2,263,190 - -0.1 2,263,610 - -0.1 2,263,611 - +0.4 2,263,649 + -0.3 2,263,649 + -0.3 2,263,657 - -0.2 2,263,657 - +0.0 2,263,657 - -0.2 2,263,660 + -0.9 2,263,662 - -2.9
Or see this region's nucleotide sequence