Strain Fitness in Dechlorosoma suillum PS around Dsui_1740

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1739 and Dsui_1740 are separated by 42 nucleotidesDsui_1740 and Dsui_1741 are separated by 57 nucleotides Dsui_1739: Dsui_1739 - flagellar basal-body P-ring protein, at 1,827,172 to 1,828,305 _1739 Dsui_1740: Dsui_1740 - flagellar rod assembly protein/muramidase FlgJ, at 1,828,348 to 1,829,346 _1740 Dsui_1741: Dsui_1741 - flagellar hook-associated protein FlgK, at 1,829,404 to 1,831,581 _1741 Position (kb) 1828 1829 1830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1827.367 kb on + strand, within Dsui_1739at 1827.376 kb on + strand, within Dsui_1739at 1827.489 kb on + strand, within Dsui_1739at 1827.507 kb on - strand, within Dsui_1739at 1827.587 kb on - strandat 1827.597 kb on + strand, within Dsui_1739at 1827.597 kb on + strand, within Dsui_1739at 1827.597 kb on + strand, within Dsui_1739at 1827.605 kb on - strand, within Dsui_1739at 1827.605 kb on - strand, within Dsui_1739at 1827.610 kb on + strand, within Dsui_1739at 1827.610 kb on + strand, within Dsui_1739at 1827.740 kb on + strand, within Dsui_1739at 1827.798 kb on - strand, within Dsui_1739at 1827.860 kb on - strand, within Dsui_1739at 1827.884 kb on + strand, within Dsui_1739at 1827.989 kb on + strand, within Dsui_1739at 1828.094 kb on - strand, within Dsui_1739at 1828.201 kb on + strandat 1828.260 kb on - strandat 1828.267 kb on - strandat 1828.330 kb on + strandat 1828.330 kb on + strandat 1828.343 kb on - strandat 1828.362 kb on + strandat 1828.449 kb on - strand, within Dsui_1740at 1828.540 kb on + strand, within Dsui_1740at 1828.548 kb on - strand, within Dsui_1740at 1828.548 kb on - strand, within Dsui_1740at 1828.551 kb on + strand, within Dsui_1740at 1828.608 kb on + strand, within Dsui_1740at 1828.626 kb on + strand, within Dsui_1740at 1828.692 kb on + strand, within Dsui_1740at 1828.725 kb on - strand, within Dsui_1740at 1828.735 kb on + strand, within Dsui_1740at 1828.759 kb on + strand, within Dsui_1740at 1828.798 kb on - strand, within Dsui_1740at 1828.856 kb on - strand, within Dsui_1740at 1829.111 kb on + strand, within Dsui_1740at 1829.116 kb on + strand, within Dsui_1740at 1829.116 kb on + strand, within Dsui_1740at 1829.124 kb on - strand, within Dsui_1740at 1829.145 kb on + strand, within Dsui_1740at 1829.177 kb on + strand, within Dsui_1740at 1829.220 kb on - strand, within Dsui_1740at 1829.275 kb on + strandat 1829.275 kb on + strandat 1829.275 kb on + strandat 1829.297 kb on - strandat 1829.335 kb on + strandat 1829.335 kb on + strandat 1829.335 kb on + strandat 1829.348 kb on - strandat 1829.364 kb on - strandat 1829.389 kb on + strandat 1829.409 kb on - strandat 1829.471 kb on - strandat 1829.505 kb on - strandat 1829.510 kb on + strandat 1829.519 kb on + strandat 1829.527 kb on - strandat 1829.537 kb on - strandat 1829.615 kb on - strandat 1829.637 kb on + strand, within Dsui_1741at 1829.637 kb on + strand, within Dsui_1741at 1829.651 kb on - strand, within Dsui_1741at 1829.651 kb on - strand, within Dsui_1741at 1829.745 kb on + strand, within Dsui_1741at 1829.792 kb on - strand, within Dsui_1741at 1829.814 kb on + strand, within Dsui_1741at 1829.815 kb on + strand, within Dsui_1741at 1829.820 kb on + strand, within Dsui_1741at 1829.823 kb on - strand, within Dsui_1741at 1829.829 kb on - strand, within Dsui_1741at 1829.874 kb on - strand, within Dsui_1741at 1829.889 kb on + strand, within Dsui_1741at 1829.956 kb on + strand, within Dsui_1741at 1829.972 kb on + strand, within Dsui_1741at 1829.979 kb on - strand, within Dsui_1741at 1829.980 kb on - strand, within Dsui_1741at 1829.985 kb on + strand, within Dsui_1741at 1830.005 kb on + strand, within Dsui_1741at 1830.040 kb on + strand, within Dsui_1741at 1830.061 kb on + strand, within Dsui_1741at 1830.123 kb on + strand, within Dsui_1741at 1830.126 kb on - strand, within Dsui_1741at 1830.238 kb on - strand, within Dsui_1741at 1830.341 kb on + strand, within Dsui_1741

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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1,827,367 + Dsui_1739 0.17 -1.8
1,827,376 + Dsui_1739 0.18 -1.3
1,827,489 + Dsui_1739 0.28 -0.5
1,827,507 - Dsui_1739 0.30 -1.1
1,827,587 - +0.5
1,827,597 + Dsui_1739 0.37 -0.5
1,827,597 + Dsui_1739 0.37 -2.5
1,827,597 + Dsui_1739 0.37 -2.1
1,827,605 - Dsui_1739 0.38 +0.5
1,827,605 - Dsui_1739 0.38 -1.1
1,827,610 + Dsui_1739 0.39 -1.5
1,827,610 + Dsui_1739 0.39 -1.8
1,827,740 + Dsui_1739 0.50 +0.5
1,827,798 - Dsui_1739 0.55 -1.1
1,827,860 - Dsui_1739 0.61 -1.5
1,827,884 + Dsui_1739 0.63 -0.5
1,827,989 + Dsui_1739 0.72 -0.5
1,828,094 - Dsui_1739 0.81 +0.5
1,828,201 + +0.5
1,828,260 - +0.5
1,828,267 - -1.5
1,828,330 + -0.1
1,828,330 + -0.1
1,828,343 - +0.5
1,828,362 + -0.1
1,828,449 - Dsui_1740 0.10 +0.5
1,828,540 + Dsui_1740 0.19 +0.0
1,828,548 - Dsui_1740 0.20 -1.5
1,828,548 - Dsui_1740 0.20 -1.1
1,828,551 + Dsui_1740 0.20 -0.2
1,828,608 + Dsui_1740 0.26 -0.3
1,828,626 + Dsui_1740 0.28 -0.6
1,828,692 + Dsui_1740 0.34 +0.1
1,828,725 - Dsui_1740 0.38 +0.5
1,828,735 + Dsui_1740 0.39 -0.4
1,828,759 + Dsui_1740 0.41 -0.1
1,828,798 - Dsui_1740 0.45 +0.5
1,828,856 - Dsui_1740 0.51 -2.8
1,829,111 + Dsui_1740 0.76 -2.3
1,829,116 + Dsui_1740 0.77 -0.3
1,829,116 + Dsui_1740 0.77 -0.5
1,829,124 - Dsui_1740 0.78 -1.1
1,829,145 + Dsui_1740 0.80 +0.0
1,829,177 + Dsui_1740 0.83 +1.8
1,829,220 - Dsui_1740 0.87 -0.5
1,829,275 + -0.2
1,829,275 + -0.3
1,829,275 + -0.6
1,829,297 - +0.5
1,829,335 + -0.5
1,829,335 + -1.1
1,829,335 + -0.1
1,829,348 - -0.5
1,829,364 - +0.5
1,829,389 + -1.8
1,829,409 - +0.5
1,829,471 - -1.1
1,829,505 - -0.3
1,829,510 + +0.5
1,829,519 + -1.1
1,829,527 - +0.5
1,829,537 - -1.8
1,829,615 - -3.1
1,829,637 + Dsui_1741 0.11 -1.1
1,829,637 + Dsui_1741 0.11 -0.5
1,829,651 - Dsui_1741 0.11 -1.1
1,829,651 - Dsui_1741 0.11 +0.5
1,829,745 + Dsui_1741 0.16 -0.1
1,829,792 - Dsui_1741 0.18 +0.5
1,829,814 + Dsui_1741 0.19 -1.1
1,829,815 + Dsui_1741 0.19 +0.5
1,829,820 + Dsui_1741 0.19 -2.5
1,829,823 - Dsui_1741 0.19 -0.5
1,829,829 - Dsui_1741 0.20 -2.3
1,829,874 - Dsui_1741 0.22 -1.8
1,829,889 + Dsui_1741 0.22 +0.5
1,829,956 + Dsui_1741 0.25 +0.5
1,829,972 + Dsui_1741 0.26 -0.5
1,829,979 - Dsui_1741 0.26 -0.5
1,829,980 - Dsui_1741 0.26 +0.5
1,829,985 + Dsui_1741 0.27 -0.5
1,830,005 + Dsui_1741 0.28 +0.5
1,830,040 + Dsui_1741 0.29 -0.1
1,830,061 + Dsui_1741 0.30 +0.5
1,830,123 + Dsui_1741 0.33 +0.5
1,830,126 - Dsui_1741 0.33 +0.5
1,830,238 - Dsui_1741 0.38 -0.5
1,830,341 + Dsui_1741 0.43 -1.5

Or see this region's nucleotide sequence