Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1404 and Dsui_1405 overlap by 4 nucleotides Dsui_1405 and Dsui_1406 are separated by 3 nucleotides Dsui_1406 and Dsui_1407 overlap by 8 nucleotides Dsui_1407 and Dsui_1408 are separated by 134 nucleotides Dsui_1408 and Dsui_1409 are separated by 24 nucleotides
Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755
_1404
Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507
_1405
Dsui_1406: Dsui_1406 - putative transcriptional regulator, BolA superfamily, at 1,464,511 to 1,464,756
_1406
Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002
_1407
Dsui_1408: Dsui_1408 - NifZ domain-containing protein, at 1,466,137 to 1,466,406
_1408
Dsui_1409: Dsui_1409 - cation diffusion facilitator family transporter, at 1,466,431 to 1,467,318
_1409
Position (kb)
1464
1465
1466
1467 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1463.888 kb on + strand, within Dsui_1405 at 1463.942 kb on + strand, within Dsui_1405 at 1464.081 kb on - strand, within Dsui_1405 at 1464.153 kb on + strand, within Dsui_1405 at 1464.241 kb on - strand, within Dsui_1405 at 1464.305 kb on - strand, within Dsui_1405 at 1464.307 kb on + strand, within Dsui_1405 at 1464.329 kb on + strand, within Dsui_1405 at 1464.331 kb on - strand, within Dsui_1405 at 1464.374 kb on - strand at 1464.467 kb on + strand at 1464.467 kb on + strand at 1466.127 kb on + strand at 1466.142 kb on - strand at 1466.365 kb on + strand, within Dsui_1408 at 1466.384 kb on - strand at 1466.429 kb on + strand at 1466.436 kb on - strand at 1466.492 kb on - strand at 1466.504 kb on + strand at 1466.512 kb on - strand at 1466.531 kb on + strand, within Dsui_1409 at 1466.586 kb on + strand at 1466.631 kb on + strand, within Dsui_1409 at 1466.700 kb on + strand at 1466.714 kb on + strand, within Dsui_1409 at 1466.811 kb on + strand at 1466.819 kb on - strand, within Dsui_1409 at 1466.985 kb on - strand, within Dsui_1409
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,463,888 + Dsui_1405 0.18 -0.3 1,463,942 + Dsui_1405 0.25 -0.3 1,464,081 - Dsui_1405 0.44 +0.3 1,464,153 + Dsui_1405 0.53 -0.5 1,464,241 - Dsui_1405 0.65 +0.3 1,464,305 - Dsui_1405 0.73 +0.3 1,464,307 + Dsui_1405 0.73 -0.3 1,464,329 + Dsui_1405 0.76 -0.5 1,464,331 - Dsui_1405 0.77 -0.7 1,464,374 - -0.7 1,464,467 + -0.6 1,464,467 + -1.4 1,466,127 + +0.3 1,466,142 - -1.7 1,466,365 + Dsui_1408 0.84 -2.7 1,466,384 - -2.0 1,466,429 + -0.7 1,466,436 - -2.2 1,466,492 - -3.4 1,466,504 + -2.0 1,466,512 - -1.2 1,466,531 + Dsui_1409 0.11 -1.2 1,466,586 + +0.3 1,466,631 + Dsui_1409 0.23 -1.2 1,466,700 + +0.3 1,466,714 + Dsui_1409 0.32 -1.2 1,466,811 + +0.3 1,466,819 - Dsui_1409 0.44 -0.7 1,466,985 - Dsui_1409 0.62 -1.2
Or see this region's nucleotide sequence