Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1068 and Dsui_1069 are separated by 98 nucleotides Dsui_1069 and Dsui_1070 are separated by 111 nucleotides Dsui_1070 and Dsui_1071 are separated by 21 nucleotides Dsui_1071 and Dsui_1072 are separated by 52 nucleotides
Dsui_1068: Dsui_1068 - heavy metal response regulator, at 1,102,435 to 1,103,112
_1068
Dsui_1069: Dsui_1069 - Cytochrome c, at 1,103,211 to 1,103,885
_1069
Dsui_1070: Dsui_1070 - putative metal-binding protein, at 1,103,997 to 1,104,416
_1070
Dsui_1071: Dsui_1071 - hypothetical protein, at 1,104,438 to 1,104,779
_1071
Dsui_1072: Dsui_1072 - outer membrane protein, at 1,104,832 to 1,106,103
_1072
Position (kb)
1103
1104
1105 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1103.001 kb on - strand, within Dsui_1068 at 1103.006 kb on - strand, within Dsui_1068 at 1103.006 kb on - strand, within Dsui_1068 at 1103.015 kb on - strand, within Dsui_1068 at 1103.029 kb on + strand, within Dsui_1068 at 1103.042 kb on - strand, within Dsui_1068 at 1103.065 kb on - strand at 1103.065 kb on - strand at 1103.107 kb on - strand at 1103.115 kb on - strand at 1103.115 kb on - strand at 1103.129 kb on - strand at 1103.192 kb on - strand at 1103.201 kb on + strand at 1103.274 kb on - strand at 1103.328 kb on + strand, within Dsui_1069 at 1103.329 kb on + strand, within Dsui_1069 at 1103.337 kb on - strand, within Dsui_1069 at 1103.355 kb on + strand, within Dsui_1069 at 1103.423 kb on + strand, within Dsui_1069 at 1103.423 kb on + strand, within Dsui_1069 at 1103.423 kb on + strand at 1103.423 kb on + strand, within Dsui_1069 at 1103.423 kb on + strand, within Dsui_1069 at 1103.431 kb on + strand at 1103.438 kb on - strand, within Dsui_1069 at 1103.448 kb on + strand, within Dsui_1069 at 1103.448 kb on + strand, within Dsui_1069 at 1103.448 kb on + strand, within Dsui_1069 at 1103.453 kb on + strand, within Dsui_1069 at 1103.456 kb on - strand, within Dsui_1069 at 1103.456 kb on - strand, within Dsui_1069 at 1103.456 kb on - strand, within Dsui_1069 at 1103.456 kb on - strand, within Dsui_1069 at 1103.456 kb on - strand, within Dsui_1069 at 1103.458 kb on + strand, within Dsui_1069 at 1103.461 kb on - strand, within Dsui_1069 at 1103.466 kb on - strand, within Dsui_1069 at 1103.466 kb on - strand, within Dsui_1069 at 1103.466 kb on - strand, within Dsui_1069 at 1103.519 kb on + strand, within Dsui_1069 at 1103.553 kb on + strand, within Dsui_1069 at 1103.562 kb on - strand, within Dsui_1069 at 1103.562 kb on - strand, within Dsui_1069 at 1103.599 kb on + strand, within Dsui_1069 at 1103.627 kb on + strand, within Dsui_1069 at 1103.654 kb on + strand, within Dsui_1069 at 1103.660 kb on + strand, within Dsui_1069 at 1103.663 kb on - strand, within Dsui_1069 at 1103.663 kb on - strand, within Dsui_1069 at 1103.675 kb on + strand, within Dsui_1069 at 1103.737 kb on - strand, within Dsui_1069 at 1103.850 kb on + strand at 1103.860 kb on + strand at 1103.868 kb on - strand at 1103.868 kb on - strand at 1103.923 kb on - strand at 1103.975 kb on - strand at 1103.975 kb on - strand at 1103.975 kb on - strand at 1103.975 kb on - strand at 1104.054 kb on - strand, within Dsui_1070 at 1104.054 kb on - strand, within Dsui_1070 at 1104.065 kb on + strand, within Dsui_1070 at 1104.073 kb on - strand, within Dsui_1070 at 1104.088 kb on + strand, within Dsui_1070 at 1104.096 kb on - strand, within Dsui_1070 at 1104.100 kb on + strand, within Dsui_1070 at 1104.147 kb on - strand, within Dsui_1070 at 1104.155 kb on + strand, within Dsui_1070 at 1104.284 kb on + strand, within Dsui_1070 at 1104.291 kb on + strand, within Dsui_1070 at 1104.292 kb on - strand, within Dsui_1070 at 1104.306 kb on - strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.318 kb on + strand, within Dsui_1070 at 1104.367 kb on + strand, within Dsui_1070 at 1104.381 kb on + strand at 1104.466 kb on + strand at 1104.474 kb on + strand, within Dsui_1071 at 1104.476 kb on + strand, within Dsui_1071 at 1104.476 kb on + strand, within Dsui_1071 at 1104.484 kb on - strand, within Dsui_1071 at 1104.542 kb on + strand, within Dsui_1071 at 1104.556 kb on + strand, within Dsui_1071 at 1104.556 kb on + strand, within Dsui_1071 at 1104.580 kb on + strand, within Dsui_1071 at 1104.590 kb on + strand, within Dsui_1071 at 1104.633 kb on - strand, within Dsui_1071 at 1104.687 kb on - strand, within Dsui_1071 at 1104.703 kb on - strand, within Dsui_1071 at 1104.909 kb on + strand at 1104.923 kb on + strand at 1104.931 kb on - strand at 1104.936 kb on - strand at 1104.936 kb on - strand at 1105.082 kb on - strand, within Dsui_1072 at 1105.088 kb on + strand, within Dsui_1072 at 1105.107 kb on - strand, within Dsui_1072 at 1105.124 kb on + strand, within Dsui_1072 at 1105.128 kb on - strand, within Dsui_1072 at 1105.152 kb on - strand, within Dsui_1072 at 1105.188 kb on + strand, within Dsui_1072 at 1105.212 kb on - strand, within Dsui_1072 at 1105.266 kb on - strand, within Dsui_1072 at 1105.270 kb on + strand, within Dsui_1072 at 1105.272 kb on + strand, within Dsui_1072 at 1105.272 kb on + strand, within Dsui_1072 at 1105.272 kb on + strand, within Dsui_1072 at 1105.280 kb on - strand, within Dsui_1072 at 1105.297 kb on - strand, within Dsui_1072 at 1105.355 kb on + strand, within Dsui_1072 at 1105.406 kb on + strand, within Dsui_1072
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 1,103,001 - Dsui_1068 0.83 -2.5 1,103,006 - Dsui_1068 0.84 -1.1 1,103,006 - Dsui_1068 0.84 +0.5 1,103,015 - Dsui_1068 0.86 -2.1 1,103,029 + Dsui_1068 0.88 -0.5 1,103,042 - Dsui_1068 0.90 +0.5 1,103,065 - +0.5 1,103,065 - -1.8 1,103,107 - -2.1 1,103,115 - -1.5 1,103,115 - -0.5 1,103,129 - -0.5 1,103,192 - -0.5 1,103,201 + -0.5 1,103,274 - +0.5 1,103,328 + Dsui_1069 0.17 -1.1 1,103,329 + Dsui_1069 0.17 -0.5 1,103,337 - Dsui_1069 0.19 -0.5 1,103,355 + Dsui_1069 0.21 +0.5 1,103,423 + Dsui_1069 0.31 -1.5 1,103,423 + Dsui_1069 0.31 +0.5 1,103,423 + -0.5 1,103,423 + Dsui_1069 0.31 +0.5 1,103,423 + Dsui_1069 0.31 +0.5 1,103,431 + +0.5 1,103,438 - Dsui_1069 0.34 -1.8 1,103,448 + Dsui_1069 0.35 +0.5 1,103,448 + Dsui_1069 0.35 +0.5 1,103,448 + Dsui_1069 0.35 +0.5 1,103,453 + Dsui_1069 0.36 +0.5 1,103,456 - Dsui_1069 0.36 +0.5 1,103,456 - Dsui_1069 0.36 -0.5 1,103,456 - Dsui_1069 0.36 -0.5 1,103,456 - Dsui_1069 0.36 -0.5 1,103,456 - Dsui_1069 0.36 -0.5 1,103,458 + Dsui_1069 0.37 +0.5 1,103,461 - Dsui_1069 0.37 -1.1 1,103,466 - Dsui_1069 0.38 -1.1 1,103,466 - Dsui_1069 0.38 -1.1 1,103,466 - Dsui_1069 0.38 -1.1 1,103,519 + Dsui_1069 0.46 -1.8 1,103,553 + Dsui_1069 0.51 +0.5 1,103,562 - Dsui_1069 0.52 -0.5 1,103,562 - Dsui_1069 0.52 +0.5 1,103,599 + Dsui_1069 0.57 +0.5 1,103,627 + Dsui_1069 0.62 +0.5 1,103,654 + Dsui_1069 0.66 -1.8 1,103,660 + Dsui_1069 0.67 +0.5 1,103,663 - Dsui_1069 0.67 +0.5 1,103,663 - Dsui_1069 0.67 -1.3 1,103,675 + Dsui_1069 0.69 -0.5 1,103,737 - Dsui_1069 0.78 -0.5 1,103,850 + +0.5 1,103,860 + -2.1 1,103,868 - +0.5 1,103,868 - +0.5 1,103,923 - +2.1 1,103,975 - -1.1 1,103,975 - -0.5 1,103,975 - -1.1 1,103,975 - -2.3 1,104,054 - Dsui_1070 0.14 -2.1 1,104,054 - Dsui_1070 0.14 +0.5 1,104,065 + Dsui_1070 0.16 -1.1 1,104,073 - Dsui_1070 0.18 +0.5 1,104,088 + Dsui_1070 0.22 +0.5 1,104,096 - Dsui_1070 0.24 +0.5 1,104,100 + Dsui_1070 0.25 -0.5 1,104,147 - Dsui_1070 0.36 +0.5 1,104,155 + Dsui_1070 0.38 +0.5 1,104,284 + Dsui_1070 0.68 -1.8 1,104,291 + Dsui_1070 0.70 +0.5 1,104,292 - Dsui_1070 0.70 +0.5 1,104,306 - Dsui_1070 0.74 -1.1 1,104,318 + Dsui_1070 0.76 -1.1 1,104,318 + Dsui_1070 0.76 +0.5 1,104,318 + Dsui_1070 0.76 +0.5 1,104,318 + Dsui_1070 0.76 -1.1 1,104,367 + Dsui_1070 0.88 -2.3 1,104,381 + -0.5 1,104,466 + +0.5 1,104,474 + Dsui_1071 0.11 -0.5 1,104,476 + Dsui_1071 0.11 +0.5 1,104,476 + Dsui_1071 0.11 +0.5 1,104,484 - Dsui_1071 0.13 +0.5 1,104,542 + Dsui_1071 0.30 -2.3 1,104,556 + Dsui_1071 0.35 +0.5 1,104,556 + Dsui_1071 0.35 +0.5 1,104,580 + Dsui_1071 0.42 -0.5 1,104,590 + Dsui_1071 0.44 -1.8 1,104,633 - Dsui_1071 0.57 +0.5 1,104,687 - Dsui_1071 0.73 +0.5 1,104,703 - Dsui_1071 0.77 +0.5 1,104,909 + -2.3 1,104,923 + -1.1 1,104,931 - +0.5 1,104,936 - +0.1 1,104,936 - -0.5 1,105,082 - Dsui_1072 0.20 -0.5 1,105,088 + Dsui_1072 0.20 -0.5 1,105,107 - Dsui_1072 0.22 -1.7 1,105,124 + Dsui_1072 0.23 +0.5 1,105,128 - Dsui_1072 0.23 -0.5 1,105,152 - Dsui_1072 0.25 -1.1 1,105,188 + Dsui_1072 0.28 +0.5 1,105,212 - Dsui_1072 0.30 +0.5 1,105,266 - Dsui_1072 0.34 +0.5 1,105,270 + Dsui_1072 0.34 -1.5 1,105,272 + Dsui_1072 0.35 -0.5 1,105,272 + Dsui_1072 0.35 -1.1 1,105,272 + Dsui_1072 0.35 -0.5 1,105,280 - Dsui_1072 0.35 +0.5 1,105,297 - Dsui_1072 0.37 -1.5 1,105,355 + Dsui_1072 0.41 -0.5 1,105,406 + Dsui_1072 0.45 -2.8
Or see this region's nucleotide sequence