Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0894 and Dsui_0895 are separated by 83 nucleotides Dsui_0895 and Dsui_0896 are separated by 18 nucleotides Dsui_0896 and Dsui_0897 are separated by 117 nucleotides
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Dsui_0895: Dsui_0895 - nitrogen regulatory protein PII, at 910,983 to 911,321
_0895
Dsui_0896: Dsui_0896 - heavy metal efflux pump, cobalt-zinc-cadmium, at 911,340 to 914,450
_0896
Dsui_0897: Dsui_0897 - RND family efflux transporter, MFP subunit, at 914,568 to 915,755
_0897
Position (kb)
911
912
913
914
915 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 910.357 kb on + strand, within Dsui_0894 at 910.402 kb on + strand, within Dsui_0894 at 910.460 kb on + strand, within Dsui_0894 at 910.512 kb on + strand, within Dsui_0894 at 910.592 kb on - strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.631 kb on + strand, within Dsui_0894 at 910.641 kb on + strand at 910.658 kb on - strand at 910.667 kb on + strand at 910.727 kb on - strand at 910.916 kb on - strand at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.155 kb on - strand, within Dsui_0895 at 911.182 kb on - strand, within Dsui_0895 at 911.274 kb on - strand, within Dsui_0895 at 911.278 kb on - strand, within Dsui_0895 at 911.331 kb on + strand at 911.331 kb on + strand at 911.373 kb on + strand at 911.380 kb on - strand at 911.398 kb on - strand at 911.405 kb on + strand at 911.405 kb on - strand at 911.410 kb on - strand at 911.413 kb on - strand at 911.420 kb on - strand at 911.551 kb on - strand at 911.628 kb on - strand at 911.638 kb on - strand at 911.735 kb on + strand, within Dsui_0896 at 911.786 kb on + strand at 911.794 kb on - strand at 911.824 kb on + strand, within Dsui_0896 at 911.873 kb on + strand, within Dsui_0896 at 911.948 kb on + strand at 911.951 kb on - strand, within Dsui_0896 at 912.029 kb on + strand, within Dsui_0896 at 912.070 kb on - strand, within Dsui_0896 at 912.089 kb on - strand, within Dsui_0896 at 912.199 kb on + strand, within Dsui_0896 at 912.238 kb on + strand, within Dsui_0896 at 912.332 kb on + strand at 912.380 kb on - strand at 912.380 kb on - strand, within Dsui_0896 at 912.465 kb on + strand, within Dsui_0896 at 912.484 kb on + strand, within Dsui_0896 at 912.484 kb on + strand, within Dsui_0896 at 912.554 kb on + strand, within Dsui_0896 at 912.562 kb on - strand, within Dsui_0896 at 912.665 kb on + strand, within Dsui_0896 at 912.667 kb on - strand, within Dsui_0896 at 912.687 kb on - strand, within Dsui_0896 at 912.762 kb on + strand, within Dsui_0896 at 912.772 kb on + strand at 912.824 kb on + strand, within Dsui_0896 at 912.832 kb on - strand at 912.874 kb on - strand, within Dsui_0896 at 912.877 kb on + strand, within Dsui_0896 at 912.941 kb on + strand, within Dsui_0896 at 912.949 kb on - strand, within Dsui_0896 at 912.967 kb on + strand, within Dsui_0896 at 912.977 kb on + strand, within Dsui_0896 at 913.047 kb on - strand, within Dsui_0896 at 913.215 kb on + strand, within Dsui_0896 at 913.220 kb on + strand, within Dsui_0896 at 913.291 kb on - strand, within Dsui_0896 at 913.292 kb on - strand, within Dsui_0896 at 913.302 kb on + strand, within Dsui_0896 at 913.406 kb on + strand, within Dsui_0896 at 913.428 kb on - strand, within Dsui_0896 at 913.432 kb on + strand, within Dsui_0896 at 913.432 kb on + strand, within Dsui_0896 at 913.450 kb on - strand, within Dsui_0896 at 913.461 kb on + strand, within Dsui_0896 at 913.495 kb on - strand, within Dsui_0896 at 913.645 kb on - strand at 913.659 kb on + strand, within Dsui_0896 at 913.659 kb on + strand, within Dsui_0896 at 913.667 kb on - strand, within Dsui_0896 at 913.673 kb on - strand, within Dsui_0896 at 913.735 kb on - strand, within Dsui_0896 at 913.778 kb on + strand, within Dsui_0896 at 913.840 kb on - strand, within Dsui_0896 at 913.855 kb on + strand, within Dsui_0896 at 913.945 kb on + strand at 913.953 kb on - strand, within Dsui_0896 at 913.953 kb on - strand, within Dsui_0896 at 913.958 kb on - strand, within Dsui_0896 at 913.958 kb on - strand, within Dsui_0896 at 914.015 kb on + strand, within Dsui_0896 at 914.015 kb on + strand at 914.039 kb on + strand, within Dsui_0896 at 914.066 kb on + strand, within Dsui_0896 at 914.066 kb on + strand, within Dsui_0896 at 914.080 kb on + strand, within Dsui_0896 at 914.162 kb on + strand at 914.163 kb on + strand at 914.166 kb on - strand at 914.191 kb on - strand at 914.300 kb on - strand at 914.468 kb on + strand at 914.617 kb on - strand at 914.645 kb on + strand at 914.712 kb on + strand, within Dsui_0897 at 914.802 kb on - strand, within Dsui_0897 at 914.874 kb on + strand at 914.876 kb on + strand, within Dsui_0897 at 914.889 kb on + strand at 914.897 kb on + strand, within Dsui_0897 at 914.983 kb on + strand at 915.059 kb on - strand, within Dsui_0897 at 915.079 kb on + strand at 915.112 kb on - strand, within Dsui_0897 at 915.340 kb on - strand, within Dsui_0897 at 915.340 kb on - strand, within Dsui_0897 at 915.421 kb on + strand, within Dsui_0897 at 915.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 910,357 + Dsui_0894 0.79 -1.5 910,402 + Dsui_0894 0.81 +0.5 910,460 + Dsui_0894 0.83 -1.5 910,512 + Dsui_0894 0.85 -0.5 910,592 - Dsui_0894 0.88 -1.1 910,631 + Dsui_0894 0.90 +0.5 910,631 + Dsui_0894 0.90 +0.5 910,641 + +0.5 910,658 - +0.5 910,667 + -0.5 910,727 - -0.5 910,916 - -1.2 911,155 - Dsui_0895 0.51 -0.2 911,155 - Dsui_0895 0.51 -0.6 911,155 - Dsui_0895 0.51 -1.0 911,182 - Dsui_0895 0.59 +1.2 911,274 - Dsui_0895 0.86 +0.6 911,278 - Dsui_0895 0.87 +0.0 911,331 + -1.5 911,331 + -1.5 911,373 + +0.5 911,380 - +0.2 911,398 - +0.9 911,405 + -0.5 911,405 - -0.5 911,410 - -0.5 911,413 - -1.6 911,420 - -0.1 911,551 - -0.6 911,628 - +0.5 911,638 - -1.5 911,735 + Dsui_0896 0.13 +0.5 911,786 + +0.5 911,794 - +0.5 911,824 + Dsui_0896 0.16 -0.5 911,873 + Dsui_0896 0.17 +0.3 911,948 + +0.5 911,951 - Dsui_0896 0.20 -1.1 912,029 + Dsui_0896 0.22 -0.5 912,070 - Dsui_0896 0.23 +0.5 912,089 - Dsui_0896 0.24 -0.5 912,199 + Dsui_0896 0.28 -0.5 912,238 + Dsui_0896 0.29 +0.5 912,332 + +0.5 912,380 - +0.5 912,380 - Dsui_0896 0.33 +0.5 912,465 + Dsui_0896 0.36 -0.9 912,484 + Dsui_0896 0.37 +0.5 912,484 + Dsui_0896 0.37 -1.8 912,554 + Dsui_0896 0.39 -1.1 912,562 - Dsui_0896 0.39 -2.5 912,665 + Dsui_0896 0.43 +0.5 912,667 - Dsui_0896 0.43 -3.3 912,687 - Dsui_0896 0.43 -0.5 912,762 + Dsui_0896 0.46 -0.5 912,772 + +0.5 912,824 + Dsui_0896 0.48 -0.5 912,832 - +1.5 912,874 - Dsui_0896 0.49 -1.5 912,877 + Dsui_0896 0.49 -1.5 912,941 + Dsui_0896 0.51 -1.5 912,949 - Dsui_0896 0.52 -0.5 912,967 + Dsui_0896 0.52 +0.5 912,977 + Dsui_0896 0.53 -1.8 913,047 - Dsui_0896 0.55 +0.5 913,215 + Dsui_0896 0.60 +0.5 913,220 + Dsui_0896 0.60 -1.5 913,291 - Dsui_0896 0.63 -3.8 913,292 - Dsui_0896 0.63 +0.5 913,302 + Dsui_0896 0.63 -2.3 913,406 + Dsui_0896 0.66 -1.5 913,428 - Dsui_0896 0.67 -0.5 913,432 + Dsui_0896 0.67 +0.5 913,432 + Dsui_0896 0.67 +0.5 913,450 - Dsui_0896 0.68 -1.1 913,461 + Dsui_0896 0.68 +0.5 913,495 - Dsui_0896 0.69 -0.5 913,645 - +0.5 913,659 + Dsui_0896 0.75 -0.5 913,659 + Dsui_0896 0.75 -1.1 913,667 - Dsui_0896 0.75 +0.5 913,673 - Dsui_0896 0.75 -2.5 913,735 - Dsui_0896 0.77 -1.1 913,778 + Dsui_0896 0.78 +0.5 913,840 - Dsui_0896 0.80 -1.8 913,855 + Dsui_0896 0.81 -0.5 913,945 + -0.5 913,953 - Dsui_0896 0.84 -1.2 913,953 - Dsui_0896 0.84 -0.5 913,958 - Dsui_0896 0.84 -0.9 913,958 - Dsui_0896 0.84 -2.1 914,015 + Dsui_0896 0.86 +1.0 914,015 + -0.5 914,039 + Dsui_0896 0.87 +0.5 914,066 + Dsui_0896 0.88 +0.5 914,066 + Dsui_0896 0.88 -0.5 914,080 + Dsui_0896 0.88 -1.1 914,162 + +0.5 914,163 + -0.5 914,166 - -0.5 914,191 - -0.5 914,300 - -1.3 914,468 + -2.1 914,617 - +0.5 914,645 + -1.1 914,712 + Dsui_0897 0.12 -1.1 914,802 - Dsui_0897 0.20 -1.5 914,874 + -0.5 914,876 + Dsui_0897 0.26 -0.5 914,889 + -1.8 914,897 + Dsui_0897 0.28 -1.8 914,983 + +0.5 915,059 - Dsui_0897 0.41 -0.5 915,079 + +0.5 915,112 - Dsui_0897 0.46 -0.5 915,340 - Dsui_0897 0.65 -2.1 915,340 - Dsui_0897 0.65 -1.8 915,421 + Dsui_0897 0.72 -1.5 915,428 + +0.5
Or see this region's nucleotide sequence