Experiment: PYE_noCalcium 25C survival rep2 12 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01689 and CCNA_01690 are separated by 3 nucleotides CCNA_01690 and CCNA_01691 overlap by 1 nucleotides
CCNA_01689: CCNA_01689 - inosine-5'-monophosphate dehydrogenase, at 1,815,952 to 1,817,415
_01689
CCNA_01690: CCNA_01690 - MAPEG family membrane protein, at 1,817,419 to 1,817,814
_01690
CCNA_01691: CCNA_01691 - tRNA/rRNA methyltransferase, at 1,817,814 to 1,819,091
_01691
Position (kb)
1817
1818 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1817.399 kb on + strand at 1817.515 kb on + strand, within CCNA_01690 at 1817.549 kb on + strand, within CCNA_01690 at 1817.549 kb on + strand, within CCNA_01690 at 1817.634 kb on - strand, within CCNA_01690 at 1817.674 kb on - strand, within CCNA_01690 at 1817.722 kb on - strand, within CCNA_01690 at 1817.734 kb on + strand, within CCNA_01690 at 1817.757 kb on + strand, within CCNA_01690 at 1817.757 kb on + strand, within CCNA_01690 at 1817.787 kb on + strand at 1817.914 kb on - strand at 1817.914 kb on - strand at 1817.995 kb on + strand, within CCNA_01691 at 1818.166 kb on + strand, within CCNA_01691 at 1818.229 kb on - strand, within CCNA_01691 at 1818.327 kb on + strand, within CCNA_01691 at 1818.335 kb on - strand, within CCNA_01691 at 1818.346 kb on - strand, within CCNA_01691 at 1818.348 kb on + strand, within CCNA_01691 at 1818.416 kb on + strand, within CCNA_01691 at 1818.417 kb on + strand, within CCNA_01691 at 1818.534 kb on + strand, within CCNA_01691 at 1818.572 kb on + strand, within CCNA_01691 at 1818.582 kb on + strand, within CCNA_01691 at 1818.688 kb on - strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.693 kb on + strand, within CCNA_01691 at 1818.701 kb on - strand, within CCNA_01691 at 1818.703 kb on - strand, within CCNA_01691 at 1818.710 kb on - strand, within CCNA_01691
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep2 12 days remove 1,817,399 + -0.3 1,817,515 + CCNA_01690 0.24 +1.2 1,817,549 + CCNA_01690 0.33 +0.4 1,817,549 + CCNA_01690 0.33 -0.7 1,817,634 - CCNA_01690 0.54 -1.7 1,817,674 - CCNA_01690 0.64 +1.2 1,817,722 - CCNA_01690 0.77 +1.1 1,817,734 + CCNA_01690 0.80 +1.2 1,817,757 + CCNA_01690 0.85 +0.6 1,817,757 + CCNA_01690 0.85 +0.8 1,817,787 + -0.3 1,817,914 - +2.7 1,817,914 - +2.7 1,817,995 + CCNA_01691 0.14 +0.1 1,818,166 + CCNA_01691 0.28 -2.4 1,818,229 - CCNA_01691 0.32 +1.7 1,818,327 + CCNA_01691 0.40 -0.0 1,818,335 - CCNA_01691 0.41 +1.7 1,818,346 - CCNA_01691 0.42 -0.8 1,818,348 + CCNA_01691 0.42 -0.9 1,818,416 + CCNA_01691 0.47 -0.1 1,818,417 + CCNA_01691 0.47 +0.3 1,818,534 + CCNA_01691 0.56 -2.2 1,818,572 + CCNA_01691 0.59 +0.6 1,818,582 + CCNA_01691 0.60 -1.8 1,818,688 - CCNA_01691 0.68 -1.0 1,818,693 + CCNA_01691 0.69 -0.4 1,818,693 + CCNA_01691 0.69 -0.5 1,818,701 - CCNA_01691 0.69 +1.7 1,818,703 - CCNA_01691 0.70 -0.3 1,818,710 - CCNA_01691 0.70 -0.4
Or see this region's nucleotide sequence