Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01532

Experiment: PYE_noCalcium 25C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep2 12 days
1,638,378	+		CCNA_01530	0.64	+0.3
1,638,416	+		CCNA_01530	0.69	+0.5
1,638,426	+		CCNA_01530	0.70	+0.8
1,638,428	+		CCNA_01530	0.70	+0.7
1,638,429	-		CCNA_01530	0.70	+1.0
1,638,434	-		CCNA_01530	0.71	+1.5
1,638,458	+		CCNA_01530	0.74	-1.3
1,638,489	+		CCNA_01530	0.77	+0.9
1,638,489	+		CCNA_01530	0.77	+0.5
1,638,509	+		CCNA_01530	0.80	+0.6
1,638,509	+		CCNA_01530	0.80	+0.5
1,638,517	-		CCNA_01530	0.81	-0.2
1,638,517	-		CCNA_01530	0.81	-2.6
1,638,521	+		CCNA_01530	0.81	+0.6
1,638,522	+		CCNA_01530	0.81	+0.9
1,638,538	+		CCNA_01530	0.83	+0.9
1,638,566	+		CCNA_01530	0.87	+0.4
1,638,578	+		CCNA_01530	0.88	+0.7
1,638,578	+		CCNA_01530	0.88	+0.2
1,638,578	+		CCNA_01530	0.88	+1.0
1,638,586	-		CCNA_01530	0.89	+0.0
1,638,613	+				+0.0
1,638,618	+				-0.0
1,638,621	-				-0.5
1,638,621	-				+1.1
1,638,631	-				-0.5
1,638,662	+				+0.5
1,638,662	+				+1.0
1,638,662	+				+1.1
1,638,670	-				-0.9
1,638,670	-				+0.4
1,638,678	+				+0.9
1,638,678	+				+1.5
1,638,686	-				+1.0
1,638,700	+				+0.3
1,638,703	-				-0.8
1,638,708	-				-0.8
1,638,739	+				+0.7
1,638,739	+				-1.5
1,638,744	+				-0.5
1,638,812	+		CCNA_01531	0.12	+1.7
1,638,839	+		CCNA_01531	0.17	-1.3
1,638,839	+		CCNA_01531	0.17	-1.5
1,638,847	-		CCNA_01531	0.19	-0.3
1,638,863	+		CCNA_01531	0.22	-0.9
1,638,868	+		CCNA_01531	0.23	-1.2
1,638,929	+		CCNA_01531	0.34	-2.2
1,638,930	+		CCNA_01531	0.34	-0.4
1,638,953	+		CCNA_01531	0.38	-0.4
1,638,961	-		CCNA_01531	0.39	-2.5
1,639,042	+		CCNA_01531	0.54	-1.2
1,639,042	+		CCNA_01531	0.54	-2.0
1,639,042	+		CCNA_01531	0.54	-1.2
1,639,042	+		CCNA_01531	0.54	-0.4
1,639,070	+		CCNA_01531	0.59	-0.9
1,639,075	+		CCNA_01531	0.60	-0.6
1,639,076	+		CCNA_01531	0.60	-1.6
1,639,099	+		CCNA_01531	0.64	-0.5
1,639,099	+		CCNA_01531	0.64	-1.3
1,639,121	+		CCNA_01531	0.68	-2.3
1,639,178	+		CCNA_01531	0.78	+0.2
1,639,178	+		CCNA_01531	0.78	-0.7
1,639,203	+		CCNA_01531	0.83	-0.8
1,639,213	+		CCNA_01531	0.85	-2.0
1,639,227	+		CCNA_01531	0.87	-1.1
1,639,235	-		CCNA_01531	0.89	+0.2
1,639,236	+		CCNA_01531	0.89	-0.7
1,639,236	+		CCNA_01531	0.89	+0.2
1,639,236	+		CCNA_01531	0.89	-0.4
1,639,244	-				+1.5
1,639,244	-				+2.5
1,639,246	+				-0.3
1,639,254	-				+1.5
1,639,276	-				-0.8
1,639,278	-				-0.0
1,639,282	+				+0.4
1,639,282	+				-0.2
1,639,282	+				+0.9
1,639,303	+				+0.6
1,639,303	+				+0.3
1,639,330	+				+1.3
1,639,336	+				+0.8
1,639,336	+				+0.6
1,639,336	+				+1.3
1,639,337	+				+0.7
1,639,337	+				+1.1
1,639,344	-				+0.5
1,639,344	-				+0.2
1,639,344	-				+0.5
1,639,345	-				-0.6
1,639,371	-				-0.0
1,639,371	-				-0.6
1,639,371	-				-0.5
1,639,403	+				+0.0
1,639,408	+				+0.2
1,639,416	-				+1.1
1,639,418	+				+0.2
1,639,428	+				+0.5
1,639,428	+				+1.5
1,639,430	+				+0.3
1,639,475	+				+0.3
1,639,483	-				-0.5
1,639,483	-				+0.4
1,639,504	+				+0.2
1,639,506	-				+0.3
1,639,516	-				-1.8
1,639,516	-				+0.7
1,639,538	+				+1.5
1,639,538	+				-0.3
1,639,546	-				-1.0
1,639,556	-				-0.6
1,639,556	-				+0.2
1,639,558	+				+0.8
1,639,578	+				+2.0
1,639,586	-				-0.7
1,639,636	-				+1.0
1,639,644	-				-1.2
1,639,644	-				-0.5
1,639,655	-				-1.5
1,639,656	+				+0.6
1,639,684	+		CCNA_01532	0.11	+0.7
1,639,688	+		CCNA_01532	0.11	+0.7
1,639,688	-		CCNA_01532	0.11	-0.3
1,639,725	+		CCNA_01532	0.12	+1.6
1,639,725	+		CCNA_01532	0.12	+1.0
1,639,725	+		CCNA_01532	0.12	+0.4
1,639,725	+		CCNA_01532	0.12	+0.8
1,639,725	+		CCNA_01532	0.12	+0.3
1,639,733	-		CCNA_01532	0.12	-2.1
1,639,733	-		CCNA_01532	0.12	+1.0
1,639,733	-				+2.0
1,639,733	-		CCNA_01532	0.12	-0.1
1,639,733	-		CCNA_01532	0.12	+0.5
1,639,748	+		CCNA_01532	0.13	+0.3
1,639,761	+		CCNA_01532	0.13	+2.4
1,639,761	+		CCNA_01532	0.13	+0.7
1,639,761	+		CCNA_01532	0.13	+1.2
1,639,764	-		CCNA_01532	0.14	+0.4
1,639,769	-		CCNA_01532	0.14	+0.2
1,639,769	-		CCNA_01532	0.14	+1.5
1,639,769	-		CCNA_01532	0.14	-0.0
1,639,769	-		CCNA_01532	0.14	-1.3
1,639,769	-		CCNA_01532	0.14	+1.9
1,639,769	-		CCNA_01532	0.14	+1.5
1,639,779	+		CCNA_01532	0.14	-1.8
1,639,805	+		CCNA_01532	0.15	+0.8
1,639,806	+		CCNA_01532	0.15	+1.1
1,639,806	+		CCNA_01532	0.15	+0.5
1,639,806	+		CCNA_01532	0.15	+0.9
1,639,806	+		CCNA_01532	0.15	+1.0
1,639,806	+		CCNA_01532	0.15	+0.7
1,639,814	-		CCNA_01532	0.15	+1.5
1,639,814	-		CCNA_01532	0.15	-1.3
1,639,814	-		CCNA_01532	0.15	+1.0
1,639,856	-		CCNA_01532	0.17	-1.0
1,639,861	-		CCNA_01532	0.17	-0.6
1,639,871	+		CCNA_01532	0.17	+1.4
1,639,871	+		CCNA_01532	0.17	+1.0
1,639,872	-		CCNA_01532	0.17	-0.9
1,639,879	-		CCNA_01532	0.18	-0.6
1,639,879	-		CCNA_01532	0.18	+1.0
1,639,894	-		CCNA_01532	0.18	-0.9
1,639,907	+		CCNA_01532	0.18	+1.4
1,639,953	-		CCNA_01532	0.20	-0.4
1,639,957	+		CCNA_01532	0.20	+0.1
1,639,969	+		CCNA_01532	0.21	+2.0
1,639,969	+		CCNA_01532	0.21	+1.5
1,639,969	+		CCNA_01532	0.21	+1.0
1,639,977	-		CCNA_01532	0.21	+1.0
1,639,977	-		CCNA_01532	0.21	+1.3
1,639,977	-		CCNA_01532	0.21	-0.8
1,639,977	-		CCNA_01532	0.21	-0.6
1,639,977	-		CCNA_01532	0.21	-0.5
1,640,009	+		CCNA_01532	0.22	+1.6
1,640,017	-		CCNA_01532	0.22	-0.4
1,640,023	+		CCNA_01532	0.23	+1.4
1,640,039	+		CCNA_01532	0.23	+1.0
1,640,054	+		CCNA_01532	0.24	+0.8
1,640,054	+		CCNA_01532	0.24	+0.9
1,640,055	-		CCNA_01532	0.24	+1.3
1,640,059	+		CCNA_01532	0.24	-0.3
1,640,103	+		CCNA_01532	0.25	+0.3
1,640,106	-		CCNA_01532	0.25	+1.5
1,640,106	-		CCNA_01532	0.25	+1.0
1,640,108	+		CCNA_01532	0.26	+1.0
1,640,109	-		CCNA_01532	0.26	+0.7
1,640,111	-		CCNA_01532	0.26	-0.3
1,640,111	-		CCNA_01532	0.26	+1.0
1,640,111	-		CCNA_01532	0.26	+1.5
1,640,116	-		CCNA_01532	0.26	+0.6
1,640,116	-		CCNA_01532	0.26	-1.0
1,640,116	-		CCNA_01532	0.26	+0.2
1,640,116	-		CCNA_01532	0.26	-1.7
1,640,162	+		CCNA_01532	0.27	-0.6
1,640,166	+		CCNA_01532	0.28	+0.7
1,640,176	-		CCNA_01532	0.28	+1.5
1,640,189	+		CCNA_01532	0.28	-1.0
1,640,199	-		CCNA_01532	0.29	+3.5
1,640,199	-		CCNA_01532	0.29	-0.4
1,640,226	+		CCNA_01532	0.30	+0.9
1,640,306	+		CCNA_01532	0.32	-0.2
1,640,309	-		CCNA_01532	0.33	-1.5
1,640,360	+		CCNA_01532	0.34	+0.6
1,640,376	+		CCNA_01532	0.35	+1.2
1,640,389	+		CCNA_01532	0.35	+1.3
1,640,399	+		CCNA_01532	0.36	+1.0
1,640,430	+		CCNA_01532	0.37	+0.9
1,640,430	+		CCNA_01532	0.37	+1.2
1,640,430	+		CCNA_01532	0.37	+1.3
1,640,430	+		CCNA_01532	0.37	+0.3
1,640,438	-		CCNA_01532	0.37	-0.4
1,640,438	-		CCNA_01532	0.37	+0.2
1,640,438	-		CCNA_01532	0.37	-0.0
1,640,438	-		CCNA_01532	0.37	+0.4
1,640,438	-		CCNA_01532	0.37	-0.6
1,640,450	+		CCNA_01532	0.37	+1.1
1,640,517	-		CCNA_01532	0.40	-1.4
1,640,523	+		CCNA_01532	0.40	+0.9
1,640,527	-		CCNA_01532	0.40	+1.5
1,640,536	-		CCNA_01532	0.40	-0.6
1,640,599	-		CCNA_01532	0.43	-0.2
1,640,612	+		CCNA_01532	0.43	+0.7
1,640,620	-		CCNA_01532	0.43	-1.2
1,640,625	-		CCNA_01532	0.44	-2.1
1,640,668	+		CCNA_01532	0.45	+1.7
1,640,673	+		CCNA_01532	0.45	+0.5
1,640,679	+		CCNA_01532	0.45	-1.9
1,640,689	+		CCNA_01532	0.46	+1.0
1,640,689	+		CCNA_01532	0.46	+1.2
1,640,698	+		CCNA_01532	0.46	+1.0
1,640,708	+		CCNA_01532	0.46	+0.5
1,640,728	-		CCNA_01532	0.47	-0.3
1,640,741	+		CCNA_01532	0.48	+1.0
1,640,741	+		CCNA_01532	0.48	+0.3
1,640,741	+		CCNA_01532	0.48	+0.7
1,640,741	+		CCNA_01532	0.48	+1.0
1,640,749	-		CCNA_01532	0.48	+0.5
1,640,749	-		CCNA_01532	0.48	-1.0
1,640,749	-		CCNA_01532	0.48	+0.1
1,640,751	+		CCNA_01532	0.48	+0.3
1,640,783	-		CCNA_01532	0.49	+1.8
1,640,787	+		CCNA_01532	0.49	+0.8
1,640,787	+		CCNA_01532	0.49	+1.0
1,640,787	+		CCNA_01532	0.49	+0.8
1,640,787	+		CCNA_01532	0.49	+1.0
1,640,787	+		CCNA_01532	0.49	+1.4
1,640,787	+		CCNA_01532	0.49	+1.3
1,640,795	-		CCNA_01532	0.49	+0.5
1,640,795	-		CCNA_01532	0.49	-1.8
1,640,795	-		CCNA_01532	0.49	-0.1
1,640,795	-		CCNA_01532	0.49	+1.0
1,640,801	+		CCNA_01532	0.50	+0.9
1,640,831	+		CCNA_01532	0.51	+0.6
1,640,831	+		CCNA_01532	0.51	+1.0
1,640,839	-		CCNA_01532	0.51	-0.9
1,640,839	-		CCNA_01532	0.51	-0.0
1,640,860	+		CCNA_01532	0.52	+1.2
1,640,868	-		CCNA_01532	0.52	+1.0
1,640,924	+		CCNA_01532	0.54	+1.1
1,640,924	+		CCNA_01532	0.54	+0.9
1,641,003	-		CCNA_01532	0.57	-0.0
1,641,021	-		CCNA_01532	0.57	+0.4
1,641,021	-		CCNA_01532	0.57	-0.3
1,641,021	-		CCNA_01532	0.57	+1.0
1,641,026	+		CCNA_01532	0.58	+0.7
1,641,046	+		CCNA_01532	0.58	-1.0
1,641,046	+		CCNA_01532	0.58	+0.3
1,641,046	+		CCNA_01532	0.58	-0.9
1,641,054	-		CCNA_01532	0.59	+0.0
1,641,054	-		CCNA_01532	0.59	+2.5
1,641,054	-		CCNA_01532	0.59	-0.7
1,641,063	+		CCNA_01532	0.59	+0.9
1,641,069	-		CCNA_01532	0.59	+1.5
1,641,069	-		CCNA_01532	0.59	+3.5
1,641,069	-		CCNA_01532	0.59	-0.0
1,641,088	+		CCNA_01532	0.60	+0.2
1,641,088	+		CCNA_01532	0.60	+0.9
1,641,088	+		CCNA_01532	0.60	+0.3
1,641,098	+		CCNA_01532	0.60	+1.0
1,641,106	-		CCNA_01532	0.60	+1.5
1,641,106	-		CCNA_01532	0.60	-0.9
1,641,131	+		CCNA_01532	0.61	+1.3
1,641,131	+				+1.5
1,641,146	+		CCNA_01532	0.62	-1.3
1,641,152	-		CCNA_01532	0.62	+0.2
1,641,154	-		CCNA_01532	0.62	+2.5
1,641,168	+		CCNA_01532	0.63	+1.3
1,641,168	+		CCNA_01532	0.63	+0.5
1,641,176	-		CCNA_01532	0.63	+1.5
1,641,176	-		CCNA_01532	0.63	+1.5
1,641,186	-		CCNA_01532	0.63	+0.5
1,641,186	-		CCNA_01532	0.63	-0.9
1,641,187	-		CCNA_01532	0.63	-0.6
1,641,219	+		CCNA_01532	0.64	+0.5
1,641,224	+		CCNA_01532	0.64	+1.1
1,641,224	+		CCNA_01532	0.64	+0.5
1,641,224	+		CCNA_01532	0.64	+0.4
1,641,224	+		CCNA_01532	0.64	+1.5
1,641,232	-		CCNA_01532	0.65	+0.8
1,641,232	-		CCNA_01532	0.65	+1.0
1,641,232	-		CCNA_01532	0.65	-1.6
1,641,232	-		CCNA_01532	0.65	+2.0
1,641,232	-		CCNA_01532	0.65	-1.0
1,641,232	-		CCNA_01532	0.65	-0.0
1,641,232	-		CCNA_01532	0.65	-0.3
1,641,232	-		CCNA_01532	0.65	-1.5
1,641,232	-		CCNA_01532	0.65	+0.1
1,641,370	+		CCNA_01532	0.70	+1.2
1,641,387	+		CCNA_01532	0.70	+0.8
1,641,402	+		CCNA_01532	0.71	+0.8
1,641,410	-		CCNA_01532	0.71	+0.2
1,641,410	-		CCNA_01532	0.71	-0.3
1,641,454	+		CCNA_01532	0.72	+0.4
1,641,494	+		CCNA_01532	0.74	+1.2
1,641,494	+		CCNA_01532	0.74	+0.6
1,641,494	+		CCNA_01532	0.74	+0.8
1,641,494	+		CCNA_01532	0.74	+1.1
1,641,502	-		CCNA_01532	0.74	-0.5
1,641,502	-		CCNA_01532	0.74	-1.0
1,641,516	+		CCNA_01532	0.75	-0.2
1,641,524	-		CCNA_01532	0.75	+0.2
1,641,524	-		CCNA_01532	0.75	+0.2
1,641,561	-		CCNA_01532	0.76	+0.2
1,641,584	-		CCNA_01532	0.77	-0.8
1,641,607	+		CCNA_01532	0.78	+1.3
1,641,607	+		CCNA_01532	0.78	+1.4
1,641,607	+		CCNA_01532	0.78	+1.1
1,641,634	+		CCNA_01532	0.79	-0.2
1,641,652	-		CCNA_01532	0.79	-0.6
1,641,698	-		CCNA_01532	0.81	+1.5
1,641,718	-		CCNA_01532	0.82	-0.8
1,641,773	+		CCNA_01532	0.84	+0.9
1,641,781	-		CCNA_01532	0.84	+0.7
1,641,784	+		CCNA_01532	0.84	-0.3
1,641,803	+		CCNA_01532	0.85	+1.9
1,641,811	-		CCNA_01532	0.85	+1.9
1,641,900	+		CCNA_01532	0.88	+0.2
1,641,917	+		CCNA_01532	0.89	-0.0
1,641,936	-		CCNA_01532	0.89	-0.6
1,641,959	+				-0.1
1,641,967	-				+0.5
1,641,988	-				-1.7
1,642,033	-				+0.2
1,642,041	+				+1.3
1,642,086	-				+0.2
1,642,089	+				+0.5
1,642,119	+				+1.3
1,642,119	+				-0.6
1,642,173	+				-0.4
1,642,173	+				+0.1
1,642,181	-				+0.2
1,642,205	+				+0.3
1,642,213	-				-0.9
1,642,223	-				+1.0
1,642,256	-				-0.3
1,642,308	-				+1.5
1,642,308	-				-0.8
1,642,366	+				-0.1
1,642,366	+				+0.0
1,642,366	+				-0.3
1,642,366	+				-0.1
1,642,366	+				+0.7
1,642,366	+				+0.1
1,642,441	+		CCNA_01533	0.20	-0.2
1,642,471	-		CCNA_01533	0.24	-1.9
1,642,487	+		CCNA_01533	0.27	+1.2
1,642,495	+		CCNA_01533	0.28	+0.3
1,642,503	-		CCNA_01533	0.29	+0.2
1,642,532	+		CCNA_01533	0.33	+0.1
1,642,550	-		CCNA_01533	0.36	-0.3
1,642,584	+		CCNA_01533	0.41	+1.5
1,642,605	-		CCNA_01533	0.44	-0.3
1,642,634	+		CCNA_01533	0.48	+0.5
1,642,639	+		CCNA_01533	0.49	-0.2
1,642,642	-		CCNA_01533	0.49	-0.1
1,642,706	-		CCNA_01533	0.58	+1.5
1,642,799	+		CCNA_01533	0.72	-0.5
1,642,799	+		CCNA_01533	0.72	+0.2
1,642,799	+		CCNA_01533	0.72	+0.1
1,642,804	+		CCNA_01533	0.73	+0.5
1,642,814	+		CCNA_01533	0.74	+0.2
1,642,832	-		CCNA_01533	0.77	-1.9
1,642,864	+		CCNA_01533	0.81	-0.1
1,642,866	+				-1.4
1,642,873	-		CCNA_01533	0.83	-1.0
1,642,957	-				-0.3
1,642,970	+				-0.3
1,642,970	+				+0.0
1,642,970	+				-0.2
1,642,970	+				+0.8
1,642,970	+				+0.5
1,642,978	-				+1.5
1,642,978	-				-1.5
1,643,037	+				-2.2
1,643,071	+		CCNA_01534	0.15	-3.5
1,643,076	+		CCNA_01534	0.17	-3.0
1,643,079	-		CCNA_01534	0.17	+2.5
1,643,198	+		CCNA_01534	0.47	-1.5
1,643,239	-		CCNA_01534	0.57	+1.5