Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01504

Experiment: PYE_noCalcium 25C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep2 12 days
1,613,307	+				+0.4
1,613,310	-				-0.2
1,613,326	+				-1.2
1,613,326	+				-0.5
1,613,326	+				-1.0
1,613,334	-				-1.2
1,613,357	-				-1.7
1,613,408	+				-1.5
1,613,408	+				-2.0
1,613,448	-		CCNA_01502	0.11	+0.2
1,613,543	+		CCNA_01502	0.21	-1.1
1,613,592	+		CCNA_01502	0.26	-0.3
1,613,669	-		CCNA_01502	0.34	+0.7
1,613,689	-		CCNA_01502	0.36	-0.3
1,613,691	+		CCNA_01502	0.37	-0.9
1,613,781	+		CCNA_01502	0.46	-1.5
1,613,781	+		CCNA_01502	0.46	-1.0
1,613,786	+		CCNA_01502	0.47	-1.4
1,613,787	+		CCNA_01502	0.47	+0.4
1,613,792	+		CCNA_01502	0.47	+0.6
1,613,799	-		CCNA_01502	0.48	-1.4
1,613,801	+		CCNA_01502	0.48	-0.1
1,613,801	+		CCNA_01502	0.48	+0.9
1,613,837	+		CCNA_01502	0.52	+0.2
1,613,837	+		CCNA_01502	0.52	+0.3
1,613,845	-		CCNA_01502	0.53	-0.8
1,613,845	-		CCNA_01502	0.53	+0.5
1,613,845	-		CCNA_01502	0.53	-1.0
1,613,857	+		CCNA_01502	0.54	+1.0
1,613,864	+		CCNA_01502	0.55	+0.3
1,613,865	+		CCNA_01502	0.55	-1.4
1,613,870	+		CCNA_01502	0.56	-1.3
1,613,870	+		CCNA_01502	0.56	-0.2
1,613,873	-		CCNA_01502	0.56	-1.5
1,613,875	+		CCNA_01502	0.56	+0.9
1,613,888	-		CCNA_01502	0.57	+1.0
1,613,948	+		CCNA_01502	0.64	-0.6
1,613,951	-		CCNA_01502	0.64	-1.8
1,613,953	+		CCNA_01502	0.64	+0.1
1,613,988	+		CCNA_01502	0.68	-1.6
1,613,998	+		CCNA_01502	0.69	+0.2
1,613,998	+		CCNA_01502	0.69	+0.3
1,613,998	+		CCNA_01502	0.69	-0.5
1,613,998	+		CCNA_01502	0.69	+0.8
1,613,998	+		CCNA_01502	0.69	+0.2
1,614,006	-		CCNA_01502	0.70	+1.0
1,614,006	-		CCNA_01502	0.70	-2.3
1,614,006	-		CCNA_01502	0.70	-0.0
1,614,018	+		CCNA_01502	0.71	+0.4
1,614,055	+		CCNA_01502	0.75	+0.6
1,614,055	+		CCNA_01502	0.75	+0.0
1,614,063	-		CCNA_01502	0.76	+0.6
1,614,095	-		CCNA_01502	0.79	+0.6
1,614,095	-		CCNA_01502	0.79	-1.1
1,614,105	-		CCNA_01502	0.80	-1.1
1,614,118	+		CCNA_01502	0.82	+0.5
1,614,168	-		CCNA_01502	0.87	-1.5
1,614,172	+		CCNA_01502	0.88	-0.9
1,614,241	-				-1.5
1,614,242	+				+0.8
1,614,261	-				+0.6
1,614,288	+				+0.8
1,614,291	-				-2.0
1,614,296	-				+0.7
1,614,296	-				+0.8
1,614,305	+				-1.6
1,614,310	+				-1.5
1,614,351	-				-3.0
1,614,355	+				-1.3
1,614,379	+				-0.0
1,614,379	+				-0.3
1,614,403	+				-0.3
1,614,489	+				-0.0
1,614,530	-		CCNA_01504	0.11	-3.3
1,614,552	-		CCNA_01504	0.12	-3.1
1,614,583	+		CCNA_01504	0.14	+0.2
1,614,606	-		CCNA_01504	0.15	-2.3
1,614,651	+		CCNA_01504	0.17	+0.2
1,614,732	+		CCNA_01504	0.21	-1.6
1,614,732	+		CCNA_01504	0.21	-1.3
1,614,732	+		CCNA_01504	0.21	-2.4
1,614,733	+		CCNA_01504	0.21	+2.5
1,614,743	+		CCNA_01504	0.21	-1.0
1,614,765	+		CCNA_01504	0.22	-3.3
1,614,804	-		CCNA_01504	0.24	-3.9
1,614,819	-		CCNA_01504	0.25	-3.4
1,614,885	+		CCNA_01504	0.28	-1.6
1,614,893	-		CCNA_01504	0.28	-1.2
1,614,893	-		CCNA_01504	0.28	-2.3
1,614,906	-		CCNA_01504	0.29	-0.6
1,615,029	-		CCNA_01504	0.35	-2.8
1,615,083	-		CCNA_01504	0.37	-3.5
1,615,124	+		CCNA_01504	0.39	+1.0
1,615,137	-		CCNA_01504	0.40	-2.1
1,615,154	+		CCNA_01504	0.41	-0.9
1,615,173	-		CCNA_01504	0.42	-2.1
1,615,191	+		CCNA_01504	0.43	-3.5
1,615,219	+		CCNA_01504	0.44	-1.7
1,615,224	+		CCNA_01504	0.44	-2.4
1,615,224	+		CCNA_01504	0.44	-1.2
1,615,227	-		CCNA_01504	0.44	-2.5
1,615,227	-		CCNA_01504	0.44	-3.4
1,615,232	-		CCNA_01504	0.45	-2.9
1,615,232	-		CCNA_01504	0.45	-2.8
1,615,268	-		CCNA_01504	0.46	-0.8
1,615,292	+		CCNA_01504	0.47	-0.0
1,615,374	-		CCNA_01504	0.51	-1.8
1,615,374	-		CCNA_01504	0.51	-3.5
1,615,449	+		CCNA_01504	0.55	-2.6
1,615,508	+		CCNA_01504	0.58	-1.0
1,615,518	+		CCNA_01504	0.58	-0.0
1,615,574	+		CCNA_01504	0.61	-2.0
1,615,582	-		CCNA_01504	0.61	-1.5
1,615,630	-		CCNA_01504	0.64	-2.0
1,615,676	+		CCNA_01504	0.66	-2.2
1,615,684	-		CCNA_01504	0.66	-1.9
1,615,684	-		CCNA_01504	0.66	-1.5
1,615,684	-		CCNA_01504	0.66	-1.4
1,615,684	-		CCNA_01504	0.66	-2.0
1,615,684	-		CCNA_01504	0.66	-1.7
1,615,684	-		CCNA_01504	0.66	-3.8
1,615,684	-		CCNA_01504	0.66	-2.8
1,615,857	+		CCNA_01504	0.74	+0.5
1,615,857	+		CCNA_01504	0.74	+1.0
1,615,857	+		CCNA_01504	0.74	-0.8
1,615,865	-		CCNA_01504	0.75	-1.5
1,615,865	-		CCNA_01504	0.75	-2.5
1,615,865	-		CCNA_01504	0.75	-2.5
1,615,865	-		CCNA_01504	0.75	-1.4
1,615,865	-		CCNA_01504	0.75	-0.0
1,615,878	-		CCNA_01504	0.75	-2.2
1,615,914	+		CCNA_01504	0.77	-0.5
1,615,936	-		CCNA_01504	0.78	-1.0
1,615,945	-		CCNA_01504	0.79	-1.5
1,615,945	-		CCNA_01504	0.79	-1.5
1,615,961	+		CCNA_01504	0.79	+0.2
1,615,961	+		CCNA_01504	0.79	-0.0
1,615,961	+		CCNA_01504	0.79	-1.7
1,615,969	-		CCNA_01504	0.80	-3.5
1,615,969	-		CCNA_01504	0.80	-0.6
1,615,969	-		CCNA_01504	0.80	-1.7
1,616,046	-		CCNA_01504	0.83	-1.8
1,616,060	+		CCNA_01504	0.84	+1.0
1,616,060	+		CCNA_01504	0.84	-1.0
1,616,068	-		CCNA_01504	0.84	-3.9
1,616,068	-		CCNA_01504	0.84	-3.5
1,616,068	-		CCNA_01504	0.84	-1.5
1,616,068	-		CCNA_01504	0.84	-3.6
1,616,068	-		CCNA_01504	0.84	-2.1
1,616,068	-		CCNA_01504	0.84	-2.8
1,616,070	-		CCNA_01504	0.85	-2.7
1,616,097	+		CCNA_01504	0.86	-1.5
1,616,105	-		CCNA_01504	0.86	-0.3
1,616,105	-		CCNA_01504	0.86	-0.0
1,616,110	-		CCNA_01504	0.86	-2.8
1,616,130	+		CCNA_01504	0.87	-2.2
1,616,157	+		CCNA_01504	0.89	-0.6
1,616,165	-		CCNA_01504	0.89	-2.0
1,616,165	-		CCNA_01504	0.89	-0.6
1,616,211	-				-3.4
1,616,212	-				-2.0
1,616,237	-				-1.5
1,616,254	+				-0.5
1,616,262	-				-0.8
1,616,262	-				-3.0
1,616,267	-				-2.5
1,616,300	-				-1.8
1,616,300	-				-3.4
1,616,317	-				-3.5
1,616,343	-				-1.0
1,616,368	-				-4.7
1,616,444	+				+1.0
1,616,483	+		CCNA_01505	0.15	-0.0
1,616,493	-		CCNA_01505	0.18	+1.0
1,616,559	+		CCNA_01505	0.40	-1.5
1,616,581	-		CCNA_01505	0.48	+0.9
1,616,596	+		CCNA_01505	0.52	-1.2
1,616,604	-		CCNA_01505	0.55	+2.2
1,616,673	-		CCNA_01505	0.78	+0.3
1,616,682	-		CCNA_01505	0.81	+1.2
1,616,741	-				-0.5
1,616,741	-				+0.4
1,616,741	-				+0.2
1,616,751	-				+0.4
1,616,780	-				-1.1
1,616,788	-				+0.9
1,616,827	-				+1.1
1,616,852	-				-1.1
1,616,869	-				+0.9
1,616,892	+		CCNA_01506	0.12	-1.2
1,616,894	-		CCNA_01506	0.12	+0.7
1,616,900	-		CCNA_01506	0.13	+1.0
1,616,965	-		CCNA_01506	0.22	+0.9
1,617,022	-		CCNA_01506	0.29	+1.3
1,617,022	-		CCNA_01506	0.29	-0.4
1,617,029	+		CCNA_01506	0.30	-0.6
1,617,037	-		CCNA_01506	0.31	+0.8
1,617,054	-		CCNA_01506	0.34	+0.6
1,617,092	-		CCNA_01506	0.39	-0.1
1,617,119	-		CCNA_01506	0.42	+1.5
1,617,139	+		CCNA_01506	0.45	+0.6
1,617,147	+		CCNA_01506	0.46	+1.8
1,617,153	-		CCNA_01506	0.47	+3.1
1,617,183	+		CCNA_01506	0.51	+2.0
1,617,191	-		CCNA_01506	0.52	+0.5
1,617,252	+		CCNA_01506	0.60	-0.5
1,617,252	+		CCNA_01506	0.60	+0.2
1,617,252	+		CCNA_01506	0.60	-0.0
1,617,252	+		CCNA_01506	0.60	+0.2
1,617,257	+		CCNA_01506	0.61	-0.2
1,617,259	+		CCNA_01506	0.61	+1.5
1,617,260	-		CCNA_01506	0.61	-0.1
1,617,260	-		CCNA_01506	0.61	+1.5
1,617,285	+		CCNA_01506	0.65	-0.3
1,617,286	-		CCNA_01506	0.65	-1.9
1,617,286	-		CCNA_01506	0.65	-0.2
1,617,298	+				+1.5
1,617,312	+		CCNA_01506	0.68	+0.7
1,617,319	+		CCNA_01506	0.69	-0.8
1,617,321	-		CCNA_01506	0.70	+0.4
1,617,327	-		CCNA_01506	0.70	+1.3
1,617,327	-		CCNA_01506	0.70	+2.4
1,617,327	-		CCNA_01506	0.70	+1.5
1,617,332	-		CCNA_01506	0.71	+0.1
1,617,332	-		CCNA_01506	0.71	+0.4
1,617,332	-		CCNA_01506	0.71	-0.3