Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01385

Experiment: PYE_noCalcium 25C survival rep2 12 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 25C survival rep2 12 days
1,501,327	+		CCNA_01384	0.42	-0.3
1,501,359	-		CCNA_01384	0.44	-2.1
1,501,359	-		CCNA_01384	0.44	+1.5
1,501,360	-		CCNA_01384	0.44	-0.1
1,501,439	+		CCNA_01384	0.50	-0.6
1,501,461	+		CCNA_01384	0.51	+0.1
1,501,463	+		CCNA_01384	0.51	-0.4
1,501,495	-		CCNA_01384	0.53	-0.5
1,501,495	-		CCNA_01384	0.53	-1.5
1,501,512	+		CCNA_01384	0.55	-0.2
1,501,512	+		CCNA_01384	0.55	-2.2
1,501,520	-		CCNA_01384	0.55	-0.5
1,501,538	+		CCNA_01384	0.56	-0.7
1,501,543	+		CCNA_01384	0.57	-0.7
1,501,628	-		CCNA_01384	0.62	-3.5
1,501,677	+		CCNA_01384	0.66	+1.0
1,501,678	+		CCNA_01384	0.66	+0.6
1,501,729	+		CCNA_01384	0.69	-1.7
1,501,739	-		CCNA_01384	0.70	+1.2
1,501,744	+		CCNA_01384	0.70	-1.2
1,501,778	-		CCNA_01384	0.73	-0.8
1,501,795	-		CCNA_01384	0.74	+2.5
1,501,810	+		CCNA_01384	0.75	-0.0
1,501,810	+		CCNA_01384	0.75	-1.3
1,501,810	+		CCNA_01384	0.75	-0.9
1,501,861	+		CCNA_01384	0.78	-0.8
1,501,861	+		CCNA_01384	0.78	+0.1
1,501,861	+		CCNA_01384	0.78	-3.3
1,501,861	+		CCNA_01384	0.78	+1.1
1,501,872	+		CCNA_01384	0.79	-1.3
1,501,879	+		CCNA_01384	0.79	-2.5
1,501,879	+		CCNA_01384	0.79	-0.5
1,501,880	-		CCNA_01384	0.79	+0.2
1,501,893	+		CCNA_01384	0.80	-0.8
1,501,901	-		CCNA_01384	0.81	-2.0
1,501,901	-		CCNA_01384	0.81	+1.1
1,501,927	+		CCNA_01384	0.83	+0.3
1,501,927	+		CCNA_01384	0.83	-1.1
1,501,927	+		CCNA_01384	0.83	+2.0
1,501,927	+		CCNA_01384	0.83	+0.3
1,501,927	+		CCNA_01384	0.83	-1.6
1,501,933	+		CCNA_01384	0.83	-1.2
1,501,935	-		CCNA_01384	0.83	-0.0
1,501,935	-		CCNA_01384	0.83	+0.5
1,501,993	+		CCNA_01384	0.87	+0.5
1,501,999	+		CCNA_01384	0.87	+0.4
1,502,000	-		CCNA_01384	0.87	+1.5
1,502,001	-		CCNA_01384	0.88	+0.4
1,502,090	-				-1.8
1,502,160	+				+0.2
1,502,165	+				-1.4
1,502,240	-				-2.5
1,502,246	+				-1.7
1,502,246	+				+0.9
1,502,254	-				-2.0
1,502,259	+				+0.2
1,502,265	+				-1.8
1,502,325	+				+0.5
1,502,331	-				-0.1
1,502,349	+				+0.5
1,502,415	+		CCNA_01385	0.15	+1.1
1,502,426	+		CCNA_01385	0.16	+1.3
1,502,428	+		CCNA_01385	0.17	-0.0
1,502,436	-		CCNA_01385	0.18	-1.7
1,502,436	-		CCNA_01385	0.18	+1.5
1,502,436	-		CCNA_01385	0.18	+3.5
1,502,436	-		CCNA_01385	0.18	+0.7
1,502,438	+		CCNA_01385	0.18	+1.7
1,502,438	+		CCNA_01385	0.18	+1.0
1,502,477	+		CCNA_01385	0.23	+1.3
1,502,477	+		CCNA_01385	0.23	+1.1
1,502,485	-		CCNA_01385	0.24	+1.2
1,502,528	+		CCNA_01385	0.30	+1.5
1,502,528	+		CCNA_01385	0.30	+1.0
1,502,536	-		CCNA_01385	0.31	+1.2
1,502,546	-		CCNA_01385	0.33	+1.0
1,502,546	-		CCNA_01385	0.33	+0.5
1,502,554	+		CCNA_01385	0.34	+1.4
1,502,554	+		CCNA_01385	0.34	-0.9
1,502,584	+		CCNA_01385	0.38	-0.7
1,502,677	+		CCNA_01385	0.51	+1.4
1,502,687	+		CCNA_01385	0.52	+0.3
1,502,742	+		CCNA_01385	0.59	+1.3
1,502,743	+		CCNA_01385	0.60	+1.5
1,502,772	-		CCNA_01385	0.64	+0.5
1,502,777	+		CCNA_01385	0.64	+1.5
1,502,777	+		CCNA_01385	0.64	+1.0
1,502,777	+		CCNA_01385	0.64	+1.3
1,502,777	+		CCNA_01385	0.64	-0.9
1,502,777	+		CCNA_01385	0.64	+1.3
1,502,777	+		CCNA_01385	0.64	+0.2
1,502,785	-		CCNA_01385	0.65	-1.6
1,502,785	-		CCNA_01385	0.65	+0.5
1,502,785	-		CCNA_01385	0.65	-0.6
1,502,785	-		CCNA_01385	0.65	+1.3
1,502,809	-		CCNA_01385	0.69	+0.2
1,502,857	-		CCNA_01385	0.75	+1.1
1,502,879	+		CCNA_01385	0.78	+0.6
1,502,879	+		CCNA_01385	0.78	+1.4
1,502,886	-		CCNA_01385	0.79	+1.9
1,502,888	+		CCNA_01385	0.79	+1.6
1,502,896	+		CCNA_01385	0.80	+1.4
1,502,961	+		CCNA_01385	0.89	+0.9
1,502,969	-				+0.2
1,502,995	+				+1.1
1,502,995	+				+1.2
1,503,003	-				+2.1
1,503,025	-				+1.2
1,503,032	+				+1.1
1,503,040	-				-1.2
1,503,065	+				-0.8
1,503,093	+				-0.6
1,503,116	+				-3.2
1,503,124	-				+0.1
1,503,165	-				-2.7
1,503,173	-		CCNA_01386	0.10	-0.4
1,503,214	-		CCNA_01386	0.17	+0.5
1,503,214	-		CCNA_01386	0.17	+0.4
1,503,269	-		CCNA_01386	0.25	+0.4
1,503,329	-		CCNA_01386	0.35	+0.2
1,503,349	-		CCNA_01386	0.38	+0.8
1,503,367	+		CCNA_01386	0.41	-3.2
1,503,367	+		CCNA_01386	0.41	-0.5
1,503,367	+		CCNA_01386	0.41	-3.2
1,503,367	+		CCNA_01386	0.41	-1.9
1,503,375	-		CCNA_01386	0.42	-0.5
1,503,375	-		CCNA_01386	0.42	-0.6
1,503,410	-		CCNA_01386	0.47	-0.6
1,503,418	+		CCNA_01386	0.49	+1.5
1,503,421	-		CCNA_01386	0.49	+0.8
1,503,439	+		CCNA_01386	0.52	+0.4
1,503,444	-		CCNA_01386	0.53	-2.3
1,503,460	+		CCNA_01386	0.55	-2.9
1,503,460	+		CCNA_01386	0.55	-0.6
1,503,460	+				+0.2
1,503,501	-		CCNA_01386	0.62	-0.2
1,503,503	+		CCNA_01386	0.62	+0.4
1,503,582	+		CCNA_01386	0.74	-0.6
1,503,595	+		CCNA_01386	0.76	-1.9
1,503,597	-		CCNA_01386	0.76	-0.5
1,503,625	-		CCNA_01386	0.81	-0.2
1,503,630	-		CCNA_01386	0.82	-0.3
1,503,631	+		CCNA_01386	0.82	+1.5
1,503,632	+		CCNA_01386	0.82	-1.0
1,503,632	+		CCNA_01386	0.82	+0.7
1,503,632	+		CCNA_01386	0.82	+1.0
1,503,632	+		CCNA_01386	0.82	-0.6
1,503,632	+		CCNA_01386	0.82	-0.6
1,503,640	-		CCNA_01386	0.83	-0.1
1,503,640	-		CCNA_01386	0.83	-0.3
1,503,640	-		CCNA_01386	0.83	-0.9
1,503,645	-		CCNA_01386	0.84	-1.2
1,503,649	+		CCNA_01386	0.85	+0.1
1,503,654	+		CCNA_01386	0.85	+1.0
1,503,654	+		CCNA_01386	0.85	-1.2
1,503,657	-		CCNA_01386	0.86	-0.3
1,503,662	-		CCNA_01386	0.87	+0.5
1,503,662	-		CCNA_01386	0.87	+0.3
1,503,679	-		CCNA_01386	0.89	-0.5
1,503,712	-				-0.2
1,503,732	-				-0.9
1,503,737	+				-0.0
1,503,780	+				+0.2
1,503,805	-				+1.0
1,503,823	-				-0.6
1,503,824	-				+0.3
1,503,850	+				-1.0
1,503,860	+				-1.5
1,503,902	+				-0.7
1,503,909	+				+0.1
1,503,909	+				-0.6
1,503,910	-				+1.5
1,503,917	-				+1.9
1,503,973	+				+1.0
1,504,008	+				+0.3
1,504,012	+				+0.4
1,504,019	-				+1.4
1,504,019	-				+1.1
1,504,019	-				-0.3