Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00917

Experiment: PYE_noCalcium 25C survival rep2 12 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00915 and CCNA_00916 are separated by 0 nucleotidesCCNA_00916 and CCNA_00917 overlap by 4 nucleotidesCCNA_00917 and CCNA_00918 are separated by 73 nucleotidesCCNA_00918 and CCNA_00919 are separated by 37 nucleotides CCNA_00915: CCNA_00915 - Molybdenum cofactor sulfurase related protein, at 993,947 to 994,708 _00915 CCNA_00916: CCNA_00916 - toxin protein parE-1, at 994,709 to 994,999 _00916 CCNA_00917: CCNA_00917 - antitoxin protein parD-1, at 994,996 to 995,262 _00917 CCNA_00918: CCNA_00918 - peptide release factor-glutamine N5-methyltransferase, at 995,336 to 996,205 _00918 CCNA_00919: CCNA_00919 - hypothetical protein, at 996,243 to 996,467 _00919 Position (kb) 994 995 996Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 993.999 kb on - strandat 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.054 kb on + strand, within CCNA_00915at 994.057 kb on - strand, within CCNA_00915at 994.062 kb on - strand, within CCNA_00915at 994.130 kb on + strand, within CCNA_00915at 994.135 kb on + strand, within CCNA_00915at 994.138 kb on - strand, within CCNA_00915at 994.143 kb on - strand, within CCNA_00915at 994.169 kb on + strand, within CCNA_00915at 994.188 kb on - strand, within CCNA_00915at 994.306 kb on - strand, within CCNA_00915at 994.370 kb on - strand, within CCNA_00915at 994.397 kb on - strand, within CCNA_00915at 994.411 kb on + strand, within CCNA_00915at 994.419 kb on - strand, within CCNA_00915at 994.419 kb on - strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.450 kb on + strand, within CCNA_00915at 994.451 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.458 kb on - strand, within CCNA_00915at 994.490 kb on - strand, within CCNA_00915at 994.505 kb on - strand, within CCNA_00915at 994.540 kb on + strand, within CCNA_00915at 994.542 kb on - strand, within CCNA_00915at 994.542 kb on - strand, within CCNA_00915at 994.571 kb on + strand, within CCNA_00915at 994.571 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.603 kb on + strand, within CCNA_00915at 994.611 kb on - strand, within CCNA_00915at 994.611 kb on - strand, within CCNA_00915at 994.629 kb on + strand, within CCNA_00915at 994.636 kb on + strandat 994.637 kb on - strandat 994.646 kb on + strandat 994.649 kb on + strandat 994.666 kb on + strandat 994.718 kb on - strandat 994.730 kb on - strandat 994.766 kb on - strand, within CCNA_00916at 994.781 kb on + strand, within CCNA_00916at 994.789 kb on - strand, within CCNA_00916at 994.789 kb on - strand, within CCNA_00916at 994.814 kb on + strand, within CCNA_00916at 994.814 kb on + strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.822 kb on - strand, within CCNA_00916at 994.849 kb on - strand, within CCNA_00916at 994.915 kb on + strand, within CCNA_00916at 994.918 kb on - strand, within CCNA_00916at 994.923 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.933 kb on + strand, within CCNA_00916at 994.936 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.941 kb on - strand, within CCNA_00916at 994.944 kb on + strand, within CCNA_00916at 994.944 kb on + strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.952 kb on - strand, within CCNA_00916at 994.987 kb on - strandat 995.027 kb on - strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.028 kb on + strand, within CCNA_00917at 995.035 kb on - strand, within CCNA_00917at 995.035 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.036 kb on - strand, within CCNA_00917at 995.070 kb on + strand, within CCNA_00917at 995.113 kb on - strand, within CCNA_00917at 995.146 kb on + strand, within CCNA_00917at 995.146 kb on + strand, within CCNA_00917at 995.180 kb on + strand, within CCNA_00917at 995.339 kb on + strandat 995.339 kb on + strandat 996.210 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 25C survival rep2 12 days
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993,999 - -1.2
994,054 + CCNA_00915 0.14 -1.7
994,054 + CCNA_00915 0.14 +1.1
994,054 + CCNA_00915 0.14 +0.0
994,057 - CCNA_00915 0.14 +1.9
994,062 - CCNA_00915 0.15 -1.1
994,130 + CCNA_00915 0.24 -2.9
994,135 + CCNA_00915 0.25 -2.1
994,138 - CCNA_00915 0.25 -1.4
994,143 - CCNA_00915 0.26 -2.1
994,169 + CCNA_00915 0.29 -0.2
994,188 - CCNA_00915 0.32 -0.4
994,306 - CCNA_00915 0.47 -0.5
994,370 - CCNA_00915 0.56 +1.3
994,397 - CCNA_00915 0.59 -2.4
994,411 + CCNA_00915 0.61 -0.1
994,419 - CCNA_00915 0.62 -0.9
994,419 - CCNA_00915 0.62 -0.2
994,450 + CCNA_00915 0.66 -0.6
994,450 + CCNA_00915 0.66 +0.1
994,450 + CCNA_00915 0.66 -0.6
994,450 + CCNA_00915 0.66 +0.7
994,450 + CCNA_00915 0.66 +1.1
994,450 + CCNA_00915 0.66 -0.2
994,451 - CCNA_00915 0.66 -0.8
994,458 - CCNA_00915 0.67 +0.1
994,458 - CCNA_00915 0.67 -0.9
994,458 - CCNA_00915 0.67 -1.3
994,458 - CCNA_00915 0.67 -0.6
994,458 - CCNA_00915 0.67 -1.5
994,490 - CCNA_00915 0.71 -0.0
994,505 - CCNA_00915 0.73 -0.4
994,540 + CCNA_00915 0.78 -0.3
994,542 - CCNA_00915 0.78 +0.8
994,542 - CCNA_00915 0.78 +0.4
994,571 + CCNA_00915 0.82 +0.0
994,571 + CCNA_00915 0.82 -0.2
994,603 + CCNA_00915 0.86 +0.4
994,603 + CCNA_00915 0.86 -1.7
994,603 + CCNA_00915 0.86 -0.6
994,611 - CCNA_00915 0.87 +0.5
994,611 - CCNA_00915 0.87 -0.4
994,629 + CCNA_00915 0.90 +0.4
994,636 + +0.6
994,637 - +1.1
994,646 + -0.9
994,649 + +0.3
994,666 + +0.8
994,718 - +0.8
994,730 - +0.2
994,766 - CCNA_00916 0.20 -0.4
994,781 + CCNA_00916 0.25 +0.7
994,789 - CCNA_00916 0.27 -1.2
994,789 - CCNA_00916 0.27 -0.2
994,814 + CCNA_00916 0.36 -0.6
994,814 + CCNA_00916 0.36 -0.8
994,822 - CCNA_00916 0.39 -0.9
994,822 - CCNA_00916 0.39 +0.7
994,822 - CCNA_00916 0.39 -0.6
994,849 - CCNA_00916 0.48 +0.4
994,915 + CCNA_00916 0.71 +0.2
994,918 - CCNA_00916 0.72 +1.5
994,923 + CCNA_00916 0.74 -0.2
994,933 + CCNA_00916 0.77 +2.0
994,933 + CCNA_00916 0.77 -1.0
994,933 + CCNA_00916 0.77 -1.4
994,936 - CCNA_00916 0.78 +1.5
994,941 - CCNA_00916 0.80 -0.9
994,941 - CCNA_00916 0.80 -1.3
994,941 - CCNA_00916 0.80 -0.2
994,944 + CCNA_00916 0.81 +0.6
994,944 + CCNA_00916 0.81 -2.3
994,952 - CCNA_00916 0.84 +2.2
994,952 - CCNA_00916 0.84 -1.0
994,952 - CCNA_00916 0.84 -0.5
994,952 - CCNA_00916 0.84 +0.1
994,952 - CCNA_00916 0.84 -1.8
994,987 - -2.2
995,027 - CCNA_00917 0.12 +0.6
995,028 + CCNA_00917 0.12 +1.4
995,028 + CCNA_00917 0.12 +0.3
995,028 + CCNA_00917 0.12 -0.2
995,028 + CCNA_00917 0.12 -0.9
995,028 + CCNA_00917 0.12 -0.1
995,028 + CCNA_00917 0.12 -0.0
995,035 - CCNA_00917 0.15 +0.9
995,035 - CCNA_00917 0.15 +0.6
995,036 - CCNA_00917 0.15 +0.1
995,036 - CCNA_00917 0.15 +0.9
995,036 - CCNA_00917 0.15 -0.3
995,036 - CCNA_00917 0.15 +1.4
995,036 - CCNA_00917 0.15 +0.8
995,036 - CCNA_00917 0.15 +0.7
995,036 - CCNA_00917 0.15 -0.8
995,070 + CCNA_00917 0.28 -0.2
995,113 - CCNA_00917 0.44 +0.8
995,146 + CCNA_00917 0.56 +2.4
995,146 + CCNA_00917 0.56 -0.2
995,180 + CCNA_00917 0.69 +2.4
995,339 + -0.8
995,339 + -0.1
996,210 + -0.4

Or see this region's nucleotide sequence