Experiment: 4 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2988 and DvMF_R0076 are separated by 313 nucleotides DvMF_R0076 and DvMF_2989 are separated by 101 nucleotides
DvMF_2988: DvMF_2988 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,766,767 to 3,768,821
_2988
DvMF_R0076: DvMF_R0076 - tRNA-Asn (RefSeq), at 3,769,135 to 3,769,210
_R0076
DvMF_2989: DvMF_2989 - Na+/H+ antiporter NhaA (RefSeq), at 3,769,312 to 3,770,694
_2989
Position (kb)
3769
3770 Strain fitness (log2 ratio)
-1
0
1
2 at 3768.279 kb on - strand, within DvMF_2988 at 3768.414 kb on - strand, within DvMF_2988 at 3768.475 kb on - strand, within DvMF_2988 at 3768.495 kb on - strand, within DvMF_2988 at 3768.559 kb on + strand, within DvMF_2988 at 3768.631 kb on + strand at 3768.739 kb on + strand at 3768.789 kb on + strand at 3768.918 kb on + strand at 3768.926 kb on - strand at 3769.049 kb on - strand at 3769.340 kb on + strand at 3769.348 kb on - strand at 3769.413 kb on + strand at 3769.422 kb on + strand at 3769.423 kb on + strand at 3769.437 kb on + strand at 3769.450 kb on - strand at 3769.656 kb on + strand, within DvMF_2989 at 3770.030 kb on + strand, within DvMF_2989 at 3770.045 kb on + strand, within DvMF_2989 at 3770.053 kb on - strand, within DvMF_2989 at 3770.107 kb on - strand, within DvMF_2989 at 3770.107 kb on - strand, within DvMF_2989 at 3770.109 kb on + strand, within DvMF_2989 at 3770.154 kb on - strand, within DvMF_2989
Per-strain Table
Position Strand Gene LocusTag Fraction 4 day starvation, 30C remove 3,768,279 - DvMF_2988 0.74 +0.9 3,768,414 - DvMF_2988 0.80 -0.0 3,768,475 - DvMF_2988 0.83 +1.8 3,768,495 - DvMF_2988 0.84 +0.9 3,768,559 + DvMF_2988 0.87 +0.5 3,768,631 + +0.6 3,768,739 + +0.4 3,768,789 + +0.1 3,768,918 + +0.1 3,768,926 - -0.5 3,769,049 - +0.5 3,769,340 + +0.9 3,769,348 - +0.4 3,769,413 + +0.4 3,769,422 + +0.4 3,769,423 + -1.7 3,769,437 + +0.2 3,769,450 - +0.8 3,769,656 + DvMF_2989 0.25 +0.3 3,770,030 + DvMF_2989 0.52 +0.2 3,770,045 + DvMF_2989 0.53 -0.6 3,770,053 - DvMF_2989 0.54 +0.6 3,770,107 - DvMF_2989 0.57 +0.4 3,770,107 - DvMF_2989 0.57 +0.4 3,770,109 + DvMF_2989 0.58 +0.7 3,770,154 - DvMF_2989 0.61 +0.5
Or see this region's nucleotide sequence