Experiment: 4 day starvation, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1316 and DvMF_1317 are separated by 124 nucleotides DvMF_1317 and DvMF_1318 overlap by 4 nucleotides DvMF_1318 and DvMF_1319 are separated by 383 nucleotides
DvMF_1316: DvMF_1316 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,608,412 to 1,609,479
_1316
DvMF_1317: DvMF_1317 - ABC transporter related (RefSeq), at 1,609,604 to 1,610,359
_1317
DvMF_1318: DvMF_1318 - BioY protein (RefSeq), at 1,610,356 to 1,610,925
_1318
DvMF_1319: DvMF_1319 - Lipocalin (RefSeq), at 1,611,309 to 1,612,091
_1319
Position (kb)
1609
1610
1611 Strain fitness (log2 ratio)
-1
0
1 at 1608.772 kb on - strand, within DvMF_1316 at 1608.985 kb on + strand, within DvMF_1316 at 1609.299 kb on + strand, within DvMF_1316 at 1609.342 kb on - strand, within DvMF_1316 at 1609.411 kb on - strand at 1609.453 kb on + strand at 1609.453 kb on + strand at 1609.678 kb on + strand at 1609.819 kb on - strand, within DvMF_1317 at 1609.953 kb on + strand, within DvMF_1317 at 1610.218 kb on + strand, within DvMF_1317 at 1610.226 kb on - strand, within DvMF_1317 at 1610.291 kb on + strand at 1610.291 kb on + strand at 1610.291 kb on + strand at 1610.291 kb on + strand at 1610.299 kb on - strand at 1610.370 kb on - strand at 1610.679 kb on + strand, within DvMF_1318 at 1610.810 kb on - strand, within DvMF_1318 at 1610.843 kb on + strand, within DvMF_1318 at 1611.063 kb on - strand at 1611.100 kb on + strand at 1611.190 kb on + strand at 1611.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4 day starvation, 30C remove 1,608,772 - DvMF_1316 0.34 +0.5 1,608,985 + DvMF_1316 0.54 +0.2 1,609,299 + DvMF_1316 0.83 -0.8 1,609,342 - DvMF_1316 0.87 +0.4 1,609,411 - +0.5 1,609,453 + +0.4 1,609,453 + +0.4 1,609,678 + +0.1 1,609,819 - DvMF_1317 0.28 -0.0 1,609,953 + DvMF_1317 0.46 +0.1 1,610,218 + DvMF_1317 0.81 -0.5 1,610,226 - DvMF_1317 0.82 +0.2 1,610,291 + +0.5 1,610,291 + +0.7 1,610,291 + +0.2 1,610,291 + +0.6 1,610,299 - +0.6 1,610,370 - +0.1 1,610,679 + DvMF_1318 0.57 +0.3 1,610,810 - DvMF_1318 0.80 +0.7 1,610,843 + DvMF_1318 0.85 +0.4 1,611,063 - +0.1 1,611,100 + +0.5 1,611,190 + +0.5 1,611,208 - +1.1
Or see this region's nucleotide sequence