Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1261

Experiment: 4 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1260 and DvMF_1261 are separated by 316 nucleotidesDvMF_1261 and DvMF_1262 are separated by 264 nucleotidesDvMF_1262 and DvMF_1263 overlap by 4 nucleotidesDvMF_1263 and DvMF_1264 are separated by 27 nucleotides DvMF_1260: DvMF_1260 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,557,254 to 1,558,612 _1260 DvMF_1261: DvMF_1261 - putative phage repressor (RefSeq), at 1,558,929 to 1,559,639 _1261 DvMF_1262: DvMF_1262 - hypothetical protein (RefSeq), at 1,559,904 to 1,560,329 _1262 DvMF_1263: DvMF_1263 - hypothetical protein (RefSeq), at 1,560,326 to 1,560,601 _1263 DvMF_1264: DvMF_1264 - Transposase-like Mu (RefSeq), at 1,560,629 to 1,562,815 _1264 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -1 0 1 2at 1557.980 kb on - strand, within DvMF_1260at 1558.065 kb on + strand, within DvMF_1260at 1558.336 kb on - strand, within DvMF_1260at 1558.410 kb on + strand, within DvMF_1260at 1558.424 kb on + strand, within DvMF_1260at 1559.867 kb on + strandat 1559.881 kb on - strandat 1559.935 kb on + strandat 1559.973 kb on + strand, within DvMF_1262at 1559.973 kb on + strand, within DvMF_1262at 1559.981 kb on - strand, within DvMF_1262at 1559.981 kb on - strand, within DvMF_1262at 1560.007 kb on + strand, within DvMF_1262at 1560.199 kb on + strand, within DvMF_1262at 1560.222 kb on - strand, within DvMF_1262at 1560.224 kb on + strand, within DvMF_1262at 1560.491 kb on - strand, within DvMF_1263at 1560.510 kb on + strand, within DvMF_1263at 1560.510 kb on + strand, within DvMF_1263at 1560.510 kb on + strand, within DvMF_1263at 1560.518 kb on - strand, within DvMF_1263at 1560.566 kb on + strand, within DvMF_1263

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 day starvation, 30C
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1,557,980 - DvMF_1260 0.53 +0.9
1,558,065 + DvMF_1260 0.60 +0.4
1,558,336 - DvMF_1260 0.80 +0.4
1,558,410 + DvMF_1260 0.85 +0.8
1,558,424 + DvMF_1260 0.86 -0.8
1,559,867 + +0.6
1,559,881 - +0.2
1,559,935 + +0.5
1,559,973 + DvMF_1262 0.16 +0.4
1,559,973 + DvMF_1262 0.16 +0.3
1,559,981 - DvMF_1262 0.18 +0.7
1,559,981 - DvMF_1262 0.18 +0.8
1,560,007 + DvMF_1262 0.24 +0.0
1,560,199 + DvMF_1262 0.69 +0.6
1,560,222 - DvMF_1262 0.75 +1.1
1,560,224 + DvMF_1262 0.75 +0.9
1,560,491 - DvMF_1263 0.60 +1.8
1,560,510 + DvMF_1263 0.67 +0.4
1,560,510 + DvMF_1263 0.67 +0.8
1,560,510 + DvMF_1263 0.67 +1.3
1,560,518 - DvMF_1263 0.70 +0.7
1,560,566 + DvMF_1263 0.87 +0.5

Or see this region's nucleotide sequence