Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0418

Experiment: 4 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0417 and DvMF_0418 are separated by 85 nucleotidesDvMF_0418 and DvMF_0419 are separated by 96 nucleotides DvMF_0417: DvMF_0417 - pyruvate carboxylase (RefSeq), at 489,026 to 492,730 _0417 DvMF_0418: DvMF_0418 - biotin/acetyl-CoA-carboxylase ligase (RefSeq), at 492,816 to 493,985 _0418 DvMF_0419: DvMF_0419 - metal dependent phosphohydrolase (RefSeq), at 494,082 to 495,497 _0419 Position (kb) 492 493 494Strain fitness (log2 ratio) -1 0 1 2at 492.783 kb on - strandat 492.955 kb on - strand, within DvMF_0418at 493.728 kb on - strand, within DvMF_0418at 493.745 kb on - strand, within DvMF_0418at 493.887 kb on + strandat 493.887 kb on + strandat 493.923 kb on - strandat 494.116 kb on + strandat 494.143 kb on + strandat 494.250 kb on - strand, within DvMF_0419at 494.575 kb on - strand, within DvMF_0419at 494.582 kb on - strand, within DvMF_0419at 494.604 kb on - strand, within DvMF_0419at 494.708 kb on - strand, within DvMF_0419at 494.739 kb on + strand, within DvMF_0419at 494.744 kb on + strand, within DvMF_0419at 494.863 kb on + strand, within DvMF_0419at 494.868 kb on + strand, within DvMF_0419at 494.876 kb on - strand, within DvMF_0419

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Per-strain Table

Position Strand Gene LocusTag Fraction 4 day starvation, 30C
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492,783 - +0.1
492,955 - DvMF_0418 0.12 +0.0
493,728 - DvMF_0418 0.78 -0.4
493,745 - DvMF_0418 0.79 -0.7
493,887 + -0.1
493,887 + -0.5
493,923 - +0.4
494,116 + +1.8
494,143 + +0.5
494,250 - DvMF_0419 0.12 +0.2
494,575 - DvMF_0419 0.35 +1.5
494,582 - DvMF_0419 0.35 +0.8
494,604 - DvMF_0419 0.37 +0.5
494,708 - DvMF_0419 0.44 +0.3
494,739 + DvMF_0419 0.46 +0.9
494,744 + DvMF_0419 0.47 +0.4
494,863 + DvMF_0419 0.55 +0.8
494,868 + DvMF_0419 0.56 +0.4
494,876 - DvMF_0419 0.56 +0.1

Or see this region's nucleotide sequence