Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06546 and H281DRAFT_06547 are separated by 138 nucleotides H281DRAFT_06547 and H281DRAFT_06548 overlap by 4 nucleotides H281DRAFT_06548 and H281DRAFT_06549 are separated by 24 nucleotides
H281DRAFT_06546: H281DRAFT_06546 - hypothetical protein, at 32,111 to 32,842
_06546
H281DRAFT_06547: H281DRAFT_06547 - RNA polymerase sigma-70 factor, ECF subfamily, at 32,981 to 33,499
_06547
H281DRAFT_06548: H281DRAFT_06548 - Transmembrane transcriptional regulator (anti-sigma factor RsiW), at 33,496 to 34,323
_06548
H281DRAFT_06549: H281DRAFT_06549 - transcriptional regulator, AraC family, at 34,348 to 35,229
_06549
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 31.984 kb on + strand at 32.216 kb on + strand at 32.259 kb on - strand, within H281DRAFT_06546 at 32.739 kb on + strand, within H281DRAFT_06546 at 32.739 kb on + strand, within H281DRAFT_06546 at 32.740 kb on - strand, within H281DRAFT_06546 at 32.882 kb on + strand at 32.979 kb on + strand at 32.979 kb on + strand at 33.029 kb on + strand at 33.151 kb on + strand, within H281DRAFT_06547 at 33.152 kb on - strand, within H281DRAFT_06547 at 33.368 kb on + strand at 34.337 kb on + strand at 34.338 kb on - strand at 34.338 kb on - strand at 34.416 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 31,984 + -0.3 32,216 + -2.1 32,259 - H281DRAFT_06546 0.20 +0.6 32,739 + H281DRAFT_06546 0.86 -0.0 32,739 + H281DRAFT_06546 0.86 -0.2 32,740 - H281DRAFT_06546 0.86 -0.2 32,882 + +0.2 32,979 + -1.7 32,979 + -0.1 33,029 + +0.4 33,151 + H281DRAFT_06547 0.33 +0.8 33,152 - H281DRAFT_06547 0.33 +0.4 33,368 + -1.7 34,337 + -3.3 34,338 - -1.0 34,338 - -0.1 34,416 + +0.3
Or see this region's nucleotide sequence