Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06355

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06354 and H281DRAFT_06355 are separated by 36 nucleotidesH281DRAFT_06355 and H281DRAFT_06356 overlap by 4 nucleotidesH281DRAFT_06356 and H281DRAFT_06357 are separated by 11 nucleotides H281DRAFT_06354: H281DRAFT_06354 - Sugar phosphate permease, at 27,989 to 29,311 _06354 H281DRAFT_06355: H281DRAFT_06355 - 4-oxalomesaconate hydratase, at 29,348 to 30,388 _06355 H281DRAFT_06356: H281DRAFT_06356 - RraA famliy, at 30,385 to 31,053 _06356 H281DRAFT_06357: H281DRAFT_06357 - hypothetical protein, at 31,065 to 31,463 _06357 Position (kb) 29 30 31Strain fitness (log2 ratio) -1 0 1at 29.372 kb on + strandat 29.713 kb on + strand, within H281DRAFT_06355at 30.089 kb on + strand, within H281DRAFT_06355at 30.125 kb on + strand, within H281DRAFT_06355at 30.258 kb on - strand, within H281DRAFT_06355at 30.303 kb on + strandat 30.305 kb on + strandat 30.305 kb on + strandat 30.306 kb on - strandat 30.306 kb on - strandat 30.379 kb on + strandat 30.380 kb on - strandat 30.384 kb on + strandat 30.524 kb on - strand, within H281DRAFT_06356at 30.809 kb on - strand, within H281DRAFT_06356at 31.075 kb on - strandat 31.281 kb on + strand, within H281DRAFT_06357at 31.282 kb on - strand, within H281DRAFT_06357at 31.368 kb on + strand, within H281DRAFT_06357

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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29,372 + +0.1
29,713 + H281DRAFT_06355 0.35 +0.8
30,089 + H281DRAFT_06355 0.71 +0.1
30,125 + H281DRAFT_06355 0.75 +1.4
30,258 - H281DRAFT_06355 0.87 +0.8
30,303 + +0.1
30,305 + -0.1
30,305 + +0.3
30,306 - -1.3
30,306 - -0.3
30,379 + -0.2
30,380 - -0.2
30,384 + -0.3
30,524 - H281DRAFT_06356 0.21 -0.2
30,809 - H281DRAFT_06356 0.63 -1.7
31,075 - +0.2
31,281 + H281DRAFT_06357 0.54 -0.9
31,282 - H281DRAFT_06357 0.54 -0.0
31,368 + H281DRAFT_06357 0.76 -0.2

Or see this region's nucleotide sequence