Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05802

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05801 and H281DRAFT_05802 are separated by 317 nucleotidesH281DRAFT_05802 and H281DRAFT_05803 are separated by 150 nucleotides H281DRAFT_05801: H281DRAFT_05801 - 5,10-methylenetetrahydrofolate reductase (NAD(P)), at 76,186 to 77,016 _05801 H281DRAFT_05802: H281DRAFT_05802 - dipeptide transport system substrate-binding protein, at 77,334 to 78,962 _05802 H281DRAFT_05803: H281DRAFT_05803 - dipeptide transport system permease protein, at 79,113 to 80,123 _05803 Position (kb) 77 78 79Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 76.465 kb on - strand, within H281DRAFT_05801at 76.546 kb on - strand, within H281DRAFT_05801at 76.600 kb on + strand, within H281DRAFT_05801at 76.600 kb on + strand, within H281DRAFT_05801at 76.600 kb on + strand, within H281DRAFT_05801at 76.687 kb on + strand, within H281DRAFT_05801at 76.708 kb on + strand, within H281DRAFT_05801at 76.961 kb on - strandat 77.014 kb on + strandat 77.015 kb on - strandat 77.141 kb on + strandat 77.141 kb on + strandat 77.141 kb on + strandat 77.142 kb on - strandat 77.287 kb on - strandat 77.287 kb on - strandat 77.287 kb on - strandat 77.287 kb on - strandat 77.298 kb on - strandat 77.493 kb on + strandat 77.493 kb on + strandat 77.493 kb on + strandat 77.493 kb on + strandat 77.494 kb on - strandat 77.523 kb on - strand, within H281DRAFT_05802at 77.535 kb on + strand, within H281DRAFT_05802at 77.535 kb on + strand, within H281DRAFT_05802at 77.535 kb on + strand, within H281DRAFT_05802at 77.625 kb on + strand, within H281DRAFT_05802at 77.625 kb on + strand, within H281DRAFT_05802at 77.625 kb on + strand, within H281DRAFT_05802at 77.625 kb on + strand, within H281DRAFT_05802at 77.625 kb on + strand, within H281DRAFT_05802at 77.626 kb on - strand, within H281DRAFT_05802at 77.778 kb on + strand, within H281DRAFT_05802at 77.836 kb on - strand, within H281DRAFT_05802at 77.898 kb on + strand, within H281DRAFT_05802at 77.922 kb on + strand, within H281DRAFT_05802at 78.006 kb on + strand, within H281DRAFT_05802at 78.006 kb on + strand, within H281DRAFT_05802at 78.008 kb on + strand, within H281DRAFT_05802at 78.157 kb on - strand, within H281DRAFT_05802at 78.157 kb on - strand, within H281DRAFT_05802at 78.238 kb on - strand, within H281DRAFT_05802at 78.246 kb on + strand, within H281DRAFT_05802at 78.336 kb on + strand, within H281DRAFT_05802at 78.336 kb on + strand, within H281DRAFT_05802at 78.336 kb on + strand, within H281DRAFT_05802at 78.390 kb on + strand, within H281DRAFT_05802at 78.390 kb on + strand, within H281DRAFT_05802at 78.391 kb on - strand, within H281DRAFT_05802at 78.391 kb on - strand, within H281DRAFT_05802at 78.391 kb on - strand, within H281DRAFT_05802at 78.418 kb on - strand, within H281DRAFT_05802at 78.429 kb on - strand, within H281DRAFT_05802at 78.510 kb on + strand, within H281DRAFT_05802at 78.510 kb on + strand, within H281DRAFT_05802at 78.591 kb on + strand, within H281DRAFT_05802at 78.591 kb on + strand, within H281DRAFT_05802at 78.591 kb on + strand, within H281DRAFT_05802at 78.592 kb on - strand, within H281DRAFT_05802at 78.592 kb on - strand, within H281DRAFT_05802at 78.607 kb on - strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.744 kb on + strand, within H281DRAFT_05802at 78.745 kb on - strand, within H281DRAFT_05802at 78.814 kb on - strandat 78.814 kb on - strandat 78.879 kb on + strandat 78.961 kb on - strandat 79.005 kb on + strandat 79.005 kb on + strandat 79.006 kb on - strandat 79.308 kb on + strand, within H281DRAFT_05803at 79.308 kb on + strand, within H281DRAFT_05803at 79.309 kb on - strand, within H281DRAFT_05803at 79.309 kb on - strand, within H281DRAFT_05803at 79.629 kb on + strand, within H281DRAFT_05803at 79.629 kb on + strand, within H281DRAFT_05803at 79.630 kb on - strand, within H281DRAFT_05803at 79.809 kb on + strand, within H281DRAFT_05803at 79.809 kb on + strand, within H281DRAFT_05803at 79.810 kb on - strand, within H281DRAFT_05803at 79.810 kb on - strand, within H281DRAFT_05803at 79.939 kb on + strand, within H281DRAFT_05803

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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76,465 - H281DRAFT_05801 0.34 -3.6
76,546 - H281DRAFT_05801 0.43 -3.5
76,600 + H281DRAFT_05801 0.50 -4.0
76,600 + H281DRAFT_05801 0.50 -2.0
76,600 + H281DRAFT_05801 0.50 -4.1
76,687 + H281DRAFT_05801 0.60 -4.6
76,708 + H281DRAFT_05801 0.63 -1.9
76,961 - -4.9
77,014 + -0.0
77,015 - -0.6
77,141 + -1.5
77,141 + +0.2
77,141 + +0.3
77,142 - +1.2
77,287 - +0.4
77,287 - -0.7
77,287 - +0.5
77,287 - +0.9
77,298 - +0.3
77,493 + +0.4
77,493 + +1.1
77,493 + +0.5
77,493 + +1.3
77,494 - -0.4
77,523 - H281DRAFT_05802 0.12 +0.3
77,535 + H281DRAFT_05802 0.12 +1.1
77,535 + H281DRAFT_05802 0.12 +0.1
77,535 + H281DRAFT_05802 0.12 -0.2
77,625 + H281DRAFT_05802 0.18 +0.2
77,625 + H281DRAFT_05802 0.18 +0.2
77,625 + H281DRAFT_05802 0.18 -0.1
77,625 + H281DRAFT_05802 0.18 +0.5
77,625 + H281DRAFT_05802 0.18 +1.0
77,626 - H281DRAFT_05802 0.18 +0.4
77,778 + H281DRAFT_05802 0.27 +0.3
77,836 - H281DRAFT_05802 0.31 +1.4
77,898 + H281DRAFT_05802 0.35 +0.3
77,922 + H281DRAFT_05802 0.36 +0.9
78,006 + H281DRAFT_05802 0.41 +1.4
78,006 + H281DRAFT_05802 0.41 -0.5
78,008 + H281DRAFT_05802 0.41 +0.5
78,157 - H281DRAFT_05802 0.51 +0.4
78,157 - H281DRAFT_05802 0.51 +0.1
78,238 - H281DRAFT_05802 0.55 -0.5
78,246 + H281DRAFT_05802 0.56 +0.7
78,336 + H281DRAFT_05802 0.62 -0.2
78,336 + H281DRAFT_05802 0.62 +0.6
78,336 + H281DRAFT_05802 0.62 +0.5
78,390 + H281DRAFT_05802 0.65 +0.9
78,390 + H281DRAFT_05802 0.65 -1.1
78,391 - H281DRAFT_05802 0.65 -0.8
78,391 - H281DRAFT_05802 0.65 +0.4
78,391 - H281DRAFT_05802 0.65 +0.4
78,418 - H281DRAFT_05802 0.67 +1.0
78,429 - H281DRAFT_05802 0.67 -1.1
78,510 + H281DRAFT_05802 0.72 +0.4
78,510 + H281DRAFT_05802 0.72 -0.8
78,591 + H281DRAFT_05802 0.77 +0.9
78,591 + H281DRAFT_05802 0.77 +0.3
78,591 + H281DRAFT_05802 0.77 +0.4
78,592 - H281DRAFT_05802 0.77 +0.2
78,592 - H281DRAFT_05802 0.77 +0.5
78,607 - H281DRAFT_05802 0.78 +0.4
78,744 + H281DRAFT_05802 0.87 +0.1
78,744 + H281DRAFT_05802 0.87 +1.1
78,744 + H281DRAFT_05802 0.87 +0.8
78,744 + H281DRAFT_05802 0.87 +0.1
78,744 + H281DRAFT_05802 0.87 +0.2
78,744 + H281DRAFT_05802 0.87 +0.2
78,744 + H281DRAFT_05802 0.87 +0.2
78,744 + H281DRAFT_05802 0.87 +0.5
78,745 - H281DRAFT_05802 0.87 +0.7
78,814 - +0.6
78,814 - -0.0
78,879 + -0.2
78,961 - -0.1
79,005 + -0.2
79,005 + -0.8
79,006 - +1.2
79,308 + H281DRAFT_05803 0.19 +0.5
79,308 + H281DRAFT_05803 0.19 +0.8
79,309 - H281DRAFT_05803 0.19 +0.2
79,309 - H281DRAFT_05803 0.19 +0.3
79,629 + H281DRAFT_05803 0.51 +1.3
79,629 + H281DRAFT_05803 0.51 +0.9
79,630 - H281DRAFT_05803 0.51 -0.0
79,809 + H281DRAFT_05803 0.69 +0.7
79,809 + H281DRAFT_05803 0.69 +0.4
79,810 - H281DRAFT_05803 0.69 +0.9
79,810 - H281DRAFT_05803 0.69 -0.4
79,939 + H281DRAFT_05803 0.82 +0.5

Or see this region's nucleotide sequence