Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05387

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05386 and H281DRAFT_05387 are separated by 376 nucleotidesH281DRAFT_05387 and H281DRAFT_05388 are separated by 92 nucleotides H281DRAFT_05386: H281DRAFT_05386 - Glucose/arabinose dehydrogenase, beta-propeller fold, at 146,160 to 147,557 _05386 H281DRAFT_05387: H281DRAFT_05387 - Pimeloyl-ACP methyl ester carboxylesterase, at 147,934 to 148,830 _05387 H281DRAFT_05388: H281DRAFT_05388 - ribonucleoside-diphosphate reductase class II, at 148,923 to 151,508 _05388 Position (kb) 147 148 149Strain fitness (log2 ratio) -1 0 1 2at 146.969 kb on + strand, within H281DRAFT_05386at 147.119 kb on - strand, within H281DRAFT_05386at 147.127 kb on + strand, within H281DRAFT_05386at 147.153 kb on + strand, within H281DRAFT_05386at 147.153 kb on + strand, within H281DRAFT_05386at 147.154 kb on - strand, within H281DRAFT_05386at 147.154 kb on - strand, within H281DRAFT_05386at 147.154 kb on - strand, within H281DRAFT_05386at 147.339 kb on + strand, within H281DRAFT_05386at 147.407 kb on + strand, within H281DRAFT_05386at 147.419 kb on + strandat 147.419 kb on + strandat 147.486 kb on + strandat 147.486 kb on + strandat 147.487 kb on - strandat 147.487 kb on - strandat 147.637 kb on - strandat 147.798 kb on - strandat 147.994 kb on + strandat 147.994 kb on + strandat 148.113 kb on + strand, within H281DRAFT_05387at 148.298 kb on + strand, within H281DRAFT_05387at 148.315 kb on + strand, within H281DRAFT_05387at 148.391 kb on - strand, within H281DRAFT_05387at 148.515 kb on + strand, within H281DRAFT_05387at 148.678 kb on - strand, within H281DRAFT_05387at 148.764 kb on + strandat 148.765 kb on - strandat 148.765 kb on - strandat 148.826 kb on + strandat 148.895 kb on + strandat 149.027 kb on + strandat 149.028 kb on - strandat 149.028 kb on - strandat 149.028 kb on - strandat 149.028 kb on - strandat 149.528 kb on - strand, within H281DRAFT_05388at 149.530 kb on - strand, within H281DRAFT_05388at 149.557 kb on + strand, within H281DRAFT_05388at 149.558 kb on - strand, within H281DRAFT_05388at 149.750 kb on - strand, within H281DRAFT_05388at 149.821 kb on + strand, within H281DRAFT_05388at 149.822 kb on - strand, within H281DRAFT_05388at 149.822 kb on - strand, within H281DRAFT_05388at 149.822 kb on - strand, within H281DRAFT_05388

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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146,969 + H281DRAFT_05386 0.58 +0.3
147,119 - H281DRAFT_05386 0.69 +0.1
147,127 + H281DRAFT_05386 0.69 -0.2
147,153 + H281DRAFT_05386 0.71 +0.3
147,153 + H281DRAFT_05386 0.71 -0.2
147,154 - H281DRAFT_05386 0.71 +1.1
147,154 - H281DRAFT_05386 0.71 +0.5
147,154 - H281DRAFT_05386 0.71 -0.0
147,339 + H281DRAFT_05386 0.84 +0.4
147,407 + H281DRAFT_05386 0.89 -1.5
147,419 + +0.8
147,419 + +0.4
147,486 + -0.3
147,486 + +1.3
147,487 - +0.5
147,487 - +0.1
147,637 - -0.4
147,798 - +0.2
147,994 + +0.1
147,994 + -0.2
148,113 + H281DRAFT_05387 0.20 +1.5
148,298 + H281DRAFT_05387 0.41 +1.0
148,315 + H281DRAFT_05387 0.42 -0.4
148,391 - H281DRAFT_05387 0.51 +1.8
148,515 + H281DRAFT_05387 0.65 +0.1
148,678 - H281DRAFT_05387 0.83 -0.0
148,764 + -0.7
148,765 - -0.4
148,765 - +0.2
148,826 + +0.2
148,895 + -0.1
149,027 + -0.3
149,028 - +0.1
149,028 - +0.1
149,028 - +0.6
149,028 - -1.3
149,528 - H281DRAFT_05388 0.23 -0.0
149,530 - H281DRAFT_05388 0.23 +0.8
149,557 + H281DRAFT_05388 0.25 +0.2
149,558 - H281DRAFT_05388 0.25 +0.6
149,750 - H281DRAFT_05388 0.32 -0.3
149,821 + H281DRAFT_05388 0.35 +0.7
149,822 - H281DRAFT_05388 0.35 +0.1
149,822 - H281DRAFT_05388 0.35 +0.4
149,822 - H281DRAFT_05388 0.35 +0.5

Or see this region's nucleotide sequence