Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05231 and H281DRAFT_05232 are separated by 902 nucleotides H281DRAFT_05232 and H281DRAFT_05233 are separated by 123 nucleotides
H281DRAFT_05231: H281DRAFT_05231 - 2-keto-4-pentenoate hydratase, at 195,177 to 195,938
_05231
H281DRAFT_05232: H281DRAFT_05232 - putative serine protein kinase, PrkA, at 196,841 to 198,763
_05232
H281DRAFT_05233: H281DRAFT_05233 - hypothetical protein, at 198,887 to 200,158
_05233
Position (kb) 196
197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 195.852 kb on + strand, within H281DRAFT_05231 at 195.852 kb on + strand, within H281DRAFT_05231 at 195.853 kb on - strand, within H281DRAFT_05231 at 195.978 kb on + strand at 195.996 kb on + strand at 196.069 kb on + strand at 196.089 kb on + strand at 196.209 kb on + strand at 196.350 kb on - strand at 196.350 kb on - strand at 196.350 kb on - strand at 196.350 kb on - strand at 196.398 kb on + strand at 196.398 kb on + strand at 196.464 kb on - strand at 196.464 kb on - strand at 196.464 kb on - strand at 196.464 kb on - strand at 196.482 kb on + strand at 196.482 kb on + strand at 196.666 kb on + strand at 196.667 kb on - strand at 196.667 kb on - strand at 196.734 kb on + strand at 196.734 kb on + strand at 196.837 kb on + strand at 196.837 kb on + strand at 196.847 kb on - strand at 196.850 kb on + strand at 196.851 kb on - strand at 196.911 kb on - strand at 197.329 kb on - strand, within H281DRAFT_05232 at 197.404 kb on + strand, within H281DRAFT_05232 at 197.538 kb on - strand, within H281DRAFT_05232 at 197.561 kb on + strand at 197.819 kb on + strand, within H281DRAFT_05232 at 197.852 kb on + strand, within H281DRAFT_05232 at 197.852 kb on + strand, within H281DRAFT_05232 at 197.892 kb on + strand, within H281DRAFT_05232 at 197.990 kb on + strand, within H281DRAFT_05232 at 197.990 kb on + strand, within H281DRAFT_05232 at 197.990 kb on + strand, within H281DRAFT_05232 at 198.227 kb on + strand, within H281DRAFT_05232 at 198.228 kb on - strand, within H281DRAFT_05232 at 198.312 kb on - strand, within H281DRAFT_05232 at 198.344 kb on + strand, within H281DRAFT_05232 at 198.353 kb on + strand, within H281DRAFT_05232 at 198.353 kb on + strand, within H281DRAFT_05232 at 198.353 kb on + strand, within H281DRAFT_05232 at 198.354 kb on - strand, within H281DRAFT_05232 at 198.557 kb on + strand, within H281DRAFT_05232 at 198.832 kb on + strand at 198.832 kb on + strand at 198.832 kb on + strand at 198.852 kb on + strand at 198.853 kb on - strand at 198.974 kb on + strand at 198.974 kb on + strand at 198.975 kb on - strand at 198.975 kb on - strand at 199.026 kb on + strand, within H281DRAFT_05233 at 199.026 kb on + strand, within H281DRAFT_05233 at 199.027 kb on - strand, within H281DRAFT_05233 at 199.045 kb on + strand, within H281DRAFT_05233 at 199.046 kb on - strand, within H281DRAFT_05233 at 199.133 kb on + strand, within H281DRAFT_05233 at 199.372 kb on + strand, within H281DRAFT_05233 at 199.733 kb on + strand, within H281DRAFT_05233
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 195,852 + H281DRAFT_05231 0.89 +0.3 195,852 + H281DRAFT_05231 0.89 +0.6 195,853 - H281DRAFT_05231 0.89 +0.9 195,978 + -0.0 195,996 + +0.8 196,069 + +0.2 196,089 + +1.0 196,209 + +0.3 196,350 - -0.1 196,350 - -0.6 196,350 - +0.2 196,350 - -0.7 196,398 + +0.5 196,398 + +0.7 196,464 - +0.4 196,464 - -0.3 196,464 - -1.5 196,464 - +0.2 196,482 + +0.7 196,482 + +1.1 196,666 + +0.2 196,667 - -0.3 196,667 - -0.4 196,734 + +0.0 196,734 + -3.0 196,837 + +0.4 196,837 + -2.0 196,847 - -0.5 196,850 + +0.5 196,851 - -0.7 196,911 - -0.6 197,329 - H281DRAFT_05232 0.25 +1.8 197,404 + H281DRAFT_05232 0.29 -1.5 197,538 - H281DRAFT_05232 0.36 -1.0 197,561 + -0.1 197,819 + H281DRAFT_05232 0.51 -0.9 197,852 + H281DRAFT_05232 0.53 -1.2 197,852 + H281DRAFT_05232 0.53 -1.1 197,892 + H281DRAFT_05232 0.55 -0.3 197,990 + H281DRAFT_05232 0.60 -2.0 197,990 + H281DRAFT_05232 0.60 -2.1 197,990 + H281DRAFT_05232 0.60 -0.8 198,227 + H281DRAFT_05232 0.72 -1.6 198,228 - H281DRAFT_05232 0.72 -1.7 198,312 - H281DRAFT_05232 0.76 +0.4 198,344 + H281DRAFT_05232 0.78 -1.6 198,353 + H281DRAFT_05232 0.79 -1.0 198,353 + H281DRAFT_05232 0.79 -0.9 198,353 + H281DRAFT_05232 0.79 -0.6 198,354 - H281DRAFT_05232 0.79 -1.3 198,557 + H281DRAFT_05232 0.89 +0.1 198,832 + -0.3 198,832 + -0.9 198,832 + +0.3 198,852 + -2.3 198,853 - -1.1 198,974 + -1.1 198,974 + -0.7 198,975 - -0.8 198,975 - -1.3 199,026 + H281DRAFT_05233 0.11 -1.2 199,026 + H281DRAFT_05233 0.11 -0.5 199,027 - H281DRAFT_05233 0.11 -2.2 199,045 + H281DRAFT_05233 0.12 -1.5 199,046 - H281DRAFT_05233 0.12 -0.7 199,133 + H281DRAFT_05233 0.19 -0.8 199,372 + H281DRAFT_05233 0.38 -1.8 199,733 + H281DRAFT_05233 0.67 -1.0
Or see this region's nucleotide sequence