Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04691

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04690 and H281DRAFT_04691 are separated by 205 nucleotidesH281DRAFT_04691 and H281DRAFT_04692 are separated by 124 nucleotides H281DRAFT_04690: H281DRAFT_04690 - TIGR02099 family protein, at 96,563 to 100,750 _04690 H281DRAFT_04691: H281DRAFT_04691 - glutamate-ammonia-ligase adenylyltransferase, at 100,956 to 103,754 _04691 H281DRAFT_04692: H281DRAFT_04692 - DNA replication and repair protein RecN, at 103,879 to 105,549 _04692 Position (kb) 100 101 102 103 104Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.984 kb on + strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 99.985 kb on - strand, within H281DRAFT_04690at 100.070 kb on + strand, within H281DRAFT_04690at 100.071 kb on - strand, within H281DRAFT_04690at 100.117 kb on - strand, within H281DRAFT_04690at 100.365 kb on + strandat 100.366 kb on - strandat 100.413 kb on - strandat 100.456 kb on + strandat 100.590 kb on + strandat 100.590 kb on + strandat 100.590 kb on + strandat 100.591 kb on - strandat 100.591 kb on - strandat 100.591 kb on - strandat 100.606 kb on - strandat 100.626 kb on + strandat 100.769 kb on - strandat 100.773 kb on + strandat 100.774 kb on - strandat 100.774 kb on - strandat 100.774 kb on - strandat 100.787 kb on - strandat 100.968 kb on - strandat 100.968 kb on - strandat 101.431 kb on + strand, within H281DRAFT_04691at 101.431 kb on + strand, within H281DRAFT_04691at 101.431 kb on + strand, within H281DRAFT_04691at 101.432 kb on - strand, within H281DRAFT_04691at 101.432 kb on - strand, within H281DRAFT_04691at 101.432 kb on - strand, within H281DRAFT_04691at 101.433 kb on + strand, within H281DRAFT_04691at 101.433 kb on + strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.434 kb on - strand, within H281DRAFT_04691at 101.551 kb on - strand, within H281DRAFT_04691at 101.551 kb on - strand, within H281DRAFT_04691at 101.631 kb on + strand, within H281DRAFT_04691at 101.631 kb on + strand, within H281DRAFT_04691at 101.638 kb on - strand, within H281DRAFT_04691at 101.638 kb on - strand, within H281DRAFT_04691at 101.769 kb on + strand, within H281DRAFT_04691at 101.878 kb on + strand, within H281DRAFT_04691at 101.910 kb on - strand, within H281DRAFT_04691at 102.166 kb on - strand, within H281DRAFT_04691at 102.166 kb on - strand, within H281DRAFT_04691at 102.229 kb on + strand, within H281DRAFT_04691at 102.229 kb on + strand, within H281DRAFT_04691at 102.229 kb on + strand, within H281DRAFT_04691at 102.521 kb on + strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.574 kb on - strand, within H281DRAFT_04691at 102.654 kb on + strand, within H281DRAFT_04691at 102.655 kb on - strand, within H281DRAFT_04691at 102.913 kb on + strand, within H281DRAFT_04691at 102.914 kb on - strand, within H281DRAFT_04691at 103.014 kb on + strand, within H281DRAFT_04691at 103.014 kb on + strand, within H281DRAFT_04691at 103.015 kb on - strand, within H281DRAFT_04691at 103.077 kb on + strand, within H281DRAFT_04691at 103.078 kb on - strandat 103.078 kb on - strand, within H281DRAFT_04691at 103.078 kb on - strand, within H281DRAFT_04691at 103.078 kb on - strand, within H281DRAFT_04691at 103.087 kb on - strand, within H281DRAFT_04691at 103.103 kb on + strand, within H281DRAFT_04691at 103.103 kb on + strand, within H281DRAFT_04691at 103.104 kb on - strand, within H281DRAFT_04691at 103.287 kb on + strand, within H281DRAFT_04691at 103.342 kb on + strand, within H281DRAFT_04691at 103.342 kb on + strand, within H281DRAFT_04691at 103.343 kb on - strand, within H281DRAFT_04691at 103.343 kb on - strand, within H281DRAFT_04691at 103.427 kb on + strand, within H281DRAFT_04691at 103.428 kb on - strand, within H281DRAFT_04691at 103.428 kb on - strand, within H281DRAFT_04691at 103.491 kb on + strandat 103.491 kb on + strandat 103.492 kb on - strandat 103.492 kb on - strandat 104.116 kb on + strand, within H281DRAFT_04692at 104.259 kb on + strand, within H281DRAFT_04692at 104.259 kb on + strandat 104.260 kb on - strand, within H281DRAFT_04692at 104.357 kb on - strand, within H281DRAFT_04692at 104.457 kb on + strand, within H281DRAFT_04692at 104.458 kb on - strand, within H281DRAFT_04692at 104.474 kb on - strand, within H281DRAFT_04692

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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99,984 + H281DRAFT_04690 0.82 -1.7
99,984 + H281DRAFT_04690 0.82 -0.1
99,984 + H281DRAFT_04690 0.82 +0.1
99,984 + H281DRAFT_04690 0.82 +0.6
99,984 + H281DRAFT_04690 0.82 +0.4
99,984 + H281DRAFT_04690 0.82 +0.3
99,984 + H281DRAFT_04690 0.82 +0.4
99,984 + H281DRAFT_04690 0.82 +0.2
99,984 + H281DRAFT_04690 0.82 -0.3
99,984 + H281DRAFT_04690 0.82 +0.6
99,985 - H281DRAFT_04690 0.82 -1.1
99,985 - H281DRAFT_04690 0.82 -0.1
99,985 - H281DRAFT_04690 0.82 +0.7
99,985 - H281DRAFT_04690 0.82 -0.4
99,985 - H281DRAFT_04690 0.82 -0.2
99,985 - H281DRAFT_04690 0.82 -0.0
99,985 - H281DRAFT_04690 0.82 -1.1
99,985 - H281DRAFT_04690 0.82 +1.1
100,070 + H281DRAFT_04690 0.84 +0.3
100,071 - H281DRAFT_04690 0.84 -0.8
100,117 - H281DRAFT_04690 0.85 -0.9
100,365 + -0.3
100,366 - +0.1
100,413 - -0.3
100,456 + +0.5
100,590 + +0.2
100,590 + -0.3
100,590 + -0.6
100,591 - +0.6
100,591 - -0.8
100,591 - +0.5
100,606 - +0.3
100,626 + +1.0
100,769 - -0.2
100,773 + -0.2
100,774 - -0.2
100,774 - +0.3
100,774 - +0.1
100,787 - +1.1
100,968 - +0.7
100,968 - +0.7
101,431 + H281DRAFT_04691 0.17 +0.7
101,431 + H281DRAFT_04691 0.17 +0.2
101,431 + H281DRAFT_04691 0.17 +0.9
101,432 - H281DRAFT_04691 0.17 +0.6
101,432 - H281DRAFT_04691 0.17 +0.9
101,432 - H281DRAFT_04691 0.17 +0.5
101,433 + H281DRAFT_04691 0.17 +0.6
101,433 + H281DRAFT_04691 0.17 -0.5
101,434 - H281DRAFT_04691 0.17 +0.4
101,434 - H281DRAFT_04691 0.17 +0.6
101,434 - H281DRAFT_04691 0.17 +1.4
101,434 - H281DRAFT_04691 0.17 +0.8
101,434 - H281DRAFT_04691 0.17 -0.4
101,551 - H281DRAFT_04691 0.21 +1.3
101,551 - H281DRAFT_04691 0.21 +0.4
101,631 + H281DRAFT_04691 0.24 +1.2
101,631 + H281DRAFT_04691 0.24 +0.2
101,638 - H281DRAFT_04691 0.24 +0.7
101,638 - H281DRAFT_04691 0.24 -0.1
101,769 + H281DRAFT_04691 0.29 +0.1
101,878 + H281DRAFT_04691 0.33 +1.1
101,910 - H281DRAFT_04691 0.34 +0.0
102,166 - H281DRAFT_04691 0.43 +0.5
102,166 - H281DRAFT_04691 0.43 +0.9
102,229 + H281DRAFT_04691 0.45 +0.6
102,229 + H281DRAFT_04691 0.45 +0.2
102,229 + H281DRAFT_04691 0.45 +1.2
102,521 + H281DRAFT_04691 0.56 +0.2
102,574 - H281DRAFT_04691 0.58 +0.3
102,574 - H281DRAFT_04691 0.58 +1.0
102,574 - H281DRAFT_04691 0.58 +1.0
102,574 - H281DRAFT_04691 0.58 -0.8
102,654 + H281DRAFT_04691 0.61 -1.4
102,655 - H281DRAFT_04691 0.61 -2.9
102,913 + H281DRAFT_04691 0.70 +0.6
102,914 - H281DRAFT_04691 0.70 +1.7
103,014 + H281DRAFT_04691 0.74 -0.5
103,014 + H281DRAFT_04691 0.74 +0.1
103,015 - H281DRAFT_04691 0.74 +1.5
103,077 + H281DRAFT_04691 0.76 +1.2
103,078 - +1.9
103,078 - H281DRAFT_04691 0.76 +0.4
103,078 - H281DRAFT_04691 0.76 +0.7
103,078 - H281DRAFT_04691 0.76 +0.5
103,087 - H281DRAFT_04691 0.76 +0.5
103,103 + H281DRAFT_04691 0.77 +0.0
103,103 + H281DRAFT_04691 0.77 +0.9
103,104 - H281DRAFT_04691 0.77 +1.1
103,287 + H281DRAFT_04691 0.83 +0.5
103,342 + H281DRAFT_04691 0.85 +0.4
103,342 + H281DRAFT_04691 0.85 +1.5
103,343 - H281DRAFT_04691 0.85 +1.0
103,343 - H281DRAFT_04691 0.85 +0.3
103,427 + H281DRAFT_04691 0.88 +0.1
103,428 - H281DRAFT_04691 0.88 +0.9
103,428 - H281DRAFT_04691 0.88 +0.5
103,491 + +0.1
103,491 + +1.2
103,492 - +0.6
103,492 - +0.4
104,116 + H281DRAFT_04692 0.14 +0.8
104,259 + H281DRAFT_04692 0.23 -0.2
104,259 + +0.0
104,260 - H281DRAFT_04692 0.23 -0.0
104,357 - H281DRAFT_04692 0.29 +0.7
104,457 + H281DRAFT_04692 0.35 +0.7
104,458 - H281DRAFT_04692 0.35 -0.5
104,474 - H281DRAFT_04692 0.36 +0.3

Or see this region's nucleotide sequence