Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04554

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04553 and H281DRAFT_04554 are separated by 134 nucleotidesH281DRAFT_04554 and H281DRAFT_04555 are separated by 24 nucleotides H281DRAFT_04553: H281DRAFT_04553 - ketol-acid reductoisomerase, at 284,958 to 285,974 _04553 H281DRAFT_04554: H281DRAFT_04554 - phosphatidylserine decarboxylase, at 286,109 to 286,747 _04554 H281DRAFT_04555: H281DRAFT_04555 - CDP-diacylglycerol--serine O-phosphatidyltransferase, at 286,772 to 287,641 _04555 Position (kb) 286 287Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 285.223 kb on - strand, within H281DRAFT_04553at 285.375 kb on + strand, within H281DRAFT_04553at 285.375 kb on + strand, within H281DRAFT_04553at 285.376 kb on - strand, within H281DRAFT_04553at 285.376 kb on - strand, within H281DRAFT_04553at 285.672 kb on + strand, within H281DRAFT_04553at 285.672 kb on + strand, within H281DRAFT_04553at 285.673 kb on - strand, within H281DRAFT_04553at 285.673 kb on - strand, within H281DRAFT_04553at 285.732 kb on + strandat 285.972 kb on + strandat 285.972 kb on + strandat 285.972 kb on + strandat 285.973 kb on - strandat 285.973 kb on - strandat 285.973 kb on - strandat 286.087 kb on + strandat 287.639 kb on + strandat 287.639 kb on + strandat 287.640 kb on - strandat 287.661 kb on - strandat 287.661 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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285,223 - H281DRAFT_04553 0.26 -2.7
285,375 + H281DRAFT_04553 0.41 -3.6
285,375 + H281DRAFT_04553 0.41 -4.2
285,376 - H281DRAFT_04553 0.41 -3.3
285,376 - H281DRAFT_04553 0.41 -2.9
285,672 + H281DRAFT_04553 0.70 -3.5
285,672 + H281DRAFT_04553 0.70 -3.3
285,673 - H281DRAFT_04553 0.70 -3.2
285,673 - H281DRAFT_04553 0.70 -2.4
285,732 + -2.1
285,972 + +0.2
285,972 + +0.2
285,972 + +0.5
285,973 - -0.2
285,973 - +0.3
285,973 - +1.6
286,087 + +0.2
287,639 + +0.3
287,639 + +0.6
287,640 - -0.7
287,661 - +0.4
287,661 - +0.0

Or see this region's nucleotide sequence