Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04548

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04546 and H281DRAFT_04547 are separated by 155 nucleotidesH281DRAFT_04547 and H281DRAFT_04548 are separated by 13 nucleotidesH281DRAFT_04548 and H281DRAFT_04549 are separated by 16 nucleotidesH281DRAFT_04549 and H281DRAFT_04550 overlap by 4 nucleotides H281DRAFT_04546: H281DRAFT_04546 - UDP-2,3-diacylglucosamine pyrophosphatase LpxH, at 278,692 to 279,633 _04546 H281DRAFT_04547: H281DRAFT_04547 - Uncharacterized membrane protein YckC, RDD family, at 279,789 to 280,346 _04547 H281DRAFT_04548: H281DRAFT_04548 - Protein of unknown function (DUF3106), at 280,360 to 281,118 _04548 H281DRAFT_04549: H281DRAFT_04549 - Protein of unknown function (DUF3619), at 281,135 to 281,563 _04549 H281DRAFT_04550: H281DRAFT_04550 - RNA polymerase, sigma-24 subunit, RpoE, at 281,560 to 282,123 _04550 Position (kb) 280 281 282Strain fitness (log2 ratio) -2 -1 0 1 2at 279.360 kb on - strand, within H281DRAFT_04546at 279.360 kb on - strand, within H281DRAFT_04546at 279.365 kb on + strand, within H281DRAFT_04546at 279.365 kb on + strand, within H281DRAFT_04546at 279.365 kb on + strand, within H281DRAFT_04546at 279.366 kb on - strand, within H281DRAFT_04546at 279.366 kb on - strand, within H281DRAFT_04546at 279.366 kb on - strand, within H281DRAFT_04546at 279.401 kb on + strand, within H281DRAFT_04546at 279.401 kb on + strand, within H281DRAFT_04546at 279.401 kb on + strand, within H281DRAFT_04546at 279.402 kb on - strand, within H281DRAFT_04546at 279.661 kb on + strandat 279.661 kb on + strandat 279.661 kb on + strandat 279.671 kb on - strandat 279.710 kb on + strandat 279.714 kb on - strandat 279.980 kb on - strand, within H281DRAFT_04547at 280.093 kb on + strand, within H281DRAFT_04547at 280.094 kb on - strand, within H281DRAFT_04547at 280.222 kb on + strand, within H281DRAFT_04547at 280.223 kb on - strand, within H281DRAFT_04547at 280.223 kb on - strandat 281.045 kb on + strandat 281.111 kb on + strandat 281.111 kb on + strandat 281.112 kb on - strandat 281.112 kb on - strandat 281.154 kb on + strandat 281.178 kb on + strand, within H281DRAFT_04549at 281.204 kb on + strand, within H281DRAFT_04549at 281.205 kb on - strand, within H281DRAFT_04549at 281.363 kb on - strand, within H281DRAFT_04549at 281.563 kb on + strandat 281.564 kb on - strandat 281.679 kb on + strand, within H281DRAFT_04550at 281.680 kb on - strand, within H281DRAFT_04550at 281.680 kb on - strand, within H281DRAFT_04550at 281.680 kb on - strand, within H281DRAFT_04550at 281.725 kb on + strand, within H281DRAFT_04550at 281.889 kb on + strand, within H281DRAFT_04550at 281.889 kb on + strand, within H281DRAFT_04550at 281.889 kb on + strand, within H281DRAFT_04550at 281.889 kb on + strand, within H281DRAFT_04550at 281.889 kb on + strand, within H281DRAFT_04550at 281.890 kb on - strand, within H281DRAFT_04550at 281.890 kb on - strand, within H281DRAFT_04550at 281.890 kb on - strand, within H281DRAFT_04550at 281.890 kb on - strand, within H281DRAFT_04550at 281.890 kb on - strand, within H281DRAFT_04550at 281.940 kb on + strand, within H281DRAFT_04550

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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279,360 - H281DRAFT_04546 0.71 +1.5
279,360 - H281DRAFT_04546 0.71 +0.0
279,365 + H281DRAFT_04546 0.71 +0.2
279,365 + H281DRAFT_04546 0.71 +0.6
279,365 + H281DRAFT_04546 0.71 +0.5
279,366 - H281DRAFT_04546 0.72 -0.4
279,366 - H281DRAFT_04546 0.72 +0.5
279,366 - H281DRAFT_04546 0.72 +0.3
279,401 + H281DRAFT_04546 0.75 +0.3
279,401 + H281DRAFT_04546 0.75 +0.6
279,401 + H281DRAFT_04546 0.75 +0.6
279,402 - H281DRAFT_04546 0.75 +1.0
279,661 + +0.6
279,661 + -0.5
279,661 + +0.0
279,671 - +0.4
279,710 + +0.9
279,714 - -0.1
279,980 - H281DRAFT_04547 0.34 +0.4
280,093 + H281DRAFT_04547 0.54 +0.8
280,094 - H281DRAFT_04547 0.55 +0.7
280,222 + H281DRAFT_04547 0.78 +0.2
280,223 - H281DRAFT_04547 0.78 -0.4
280,223 - +1.3
281,045 + -1.7
281,111 + -2.0
281,111 + -1.7
281,112 - -0.5
281,112 - +0.1
281,154 + -0.2
281,178 + H281DRAFT_04549 0.10 -2.2
281,204 + H281DRAFT_04549 0.16 -0.8
281,205 - H281DRAFT_04549 0.16 -0.1
281,363 - H281DRAFT_04549 0.53 +0.1
281,563 + -0.3
281,564 - -0.1
281,679 + H281DRAFT_04550 0.21 +0.6
281,680 - H281DRAFT_04550 0.21 +0.4
281,680 - H281DRAFT_04550 0.21 +0.6
281,680 - H281DRAFT_04550 0.21 +1.8
281,725 + H281DRAFT_04550 0.29 -0.2
281,889 + H281DRAFT_04550 0.58 -0.3
281,889 + H281DRAFT_04550 0.58 -0.2
281,889 + H281DRAFT_04550 0.58 -1.4
281,889 + H281DRAFT_04550 0.58 +1.0
281,889 + H281DRAFT_04550 0.58 +0.5
281,890 - H281DRAFT_04550 0.59 -0.2
281,890 - H281DRAFT_04550 0.59 +0.8
281,890 - H281DRAFT_04550 0.59 -0.5
281,890 - H281DRAFT_04550 0.59 -0.3
281,890 - H281DRAFT_04550 0.59 +0.2
281,940 + H281DRAFT_04550 0.67 +0.2

Or see this region's nucleotide sequence