Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04160 and H281DRAFT_04161 are separated by 282 nucleotides H281DRAFT_04161 and H281DRAFT_04162 are separated by 52 nucleotides H281DRAFT_04162 and H281DRAFT_04163 overlap by 4 nucleotides
H281DRAFT_04160: H281DRAFT_04160 - D-sorbitol dehydrogenase (acceptor), at 272,921 to 273,703
_04160
H281DRAFT_04161: H281DRAFT_04161 - ferric uptake regulator, Fur family, at 273,986 to 274,462
_04161
H281DRAFT_04162: H281DRAFT_04162 - zinc/manganese transport system substrate-binding protein, at 274,515 to 275,456
_04162
H281DRAFT_04163: H281DRAFT_04163 - zinc/manganese transport system ATP-binding protein, at 275,453 to 276,406
_04163
Position (kb) 273
274
275 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 272.997 kb on - strand at 273.283 kb on + strand, within H281DRAFT_04160 at 273.283 kb on + strand, within H281DRAFT_04160 at 273.283 kb on + strand, within H281DRAFT_04160 at 273.284 kb on - strand, within H281DRAFT_04160 at 273.284 kb on - strand, within H281DRAFT_04160 at 273.284 kb on - strand, within H281DRAFT_04160 at 273.284 kb on - strand, within H281DRAFT_04160 at 273.624 kb on + strand, within H281DRAFT_04160 at 273.908 kb on + strand at 273.916 kb on - strand at 274.088 kb on + strand, within H281DRAFT_04161 at 274.089 kb on - strand, within H281DRAFT_04161 at 274.089 kb on - strand, within H281DRAFT_04161 at 274.089 kb on - strand, within H281DRAFT_04161 at 274.513 kb on + strand at 274.513 kb on + strand at 274.514 kb on - strand at 274.638 kb on + strand, within H281DRAFT_04162 at 274.776 kb on + strand, within H281DRAFT_04162 at 274.776 kb on + strand, within H281DRAFT_04162 at 274.792 kb on - strand, within H281DRAFT_04162 at 275.059 kb on - strand, within H281DRAFT_04162 at 275.102 kb on + strand, within H281DRAFT_04162 at 275.102 kb on + strand, within H281DRAFT_04162 at 275.103 kb on - strand, within H281DRAFT_04162 at 275.103 kb on - strand, within H281DRAFT_04162 at 275.238 kb on + strand, within H281DRAFT_04162 at 275.239 kb on - strand, within H281DRAFT_04162 at 275.241 kb on - strand, within H281DRAFT_04162 at 275.347 kb on - strand, within H281DRAFT_04162
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 272,997 - +0.1 273,283 + H281DRAFT_04160 0.46 +0.5 273,283 + H281DRAFT_04160 0.46 -0.1 273,283 + H281DRAFT_04160 0.46 +0.4 273,284 - H281DRAFT_04160 0.46 +0.3 273,284 - H281DRAFT_04160 0.46 +0.5 273,284 - H281DRAFT_04160 0.46 +0.8 273,284 - H281DRAFT_04160 0.46 -0.3 273,624 + H281DRAFT_04160 0.90 -0.2 273,908 + -0.1 273,916 - -0.6 274,088 + H281DRAFT_04161 0.21 -0.8 274,089 - H281DRAFT_04161 0.22 -0.2 274,089 - H281DRAFT_04161 0.22 -0.6 274,089 - H281DRAFT_04161 0.22 -0.3 274,513 + -0.2 274,513 + -0.1 274,514 - +0.3 274,638 + H281DRAFT_04162 0.13 +0.3 274,776 + H281DRAFT_04162 0.28 -3.2 274,776 + H281DRAFT_04162 0.28 -1.0 274,792 - H281DRAFT_04162 0.29 -2.8 275,059 - H281DRAFT_04162 0.58 -2.1 275,102 + H281DRAFT_04162 0.62 -0.0 275,102 + H281DRAFT_04162 0.62 -0.8 275,103 - H281DRAFT_04162 0.62 -0.5 275,103 - H281DRAFT_04162 0.62 -0.6 275,238 + H281DRAFT_04162 0.77 +0.4 275,239 - H281DRAFT_04162 0.77 -0.3 275,241 - H281DRAFT_04162 0.77 -0.0 275,347 - H281DRAFT_04162 0.88 -0.1
Or see this region's nucleotide sequence