Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03608

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03607 and H281DRAFT_03608 are separated by 288 nucleotidesH281DRAFT_03608 and H281DRAFT_03609 are separated by 22 nucleotides H281DRAFT_03607: H281DRAFT_03607 - PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein, at 115,573 to 116,511 _03607 H281DRAFT_03608: H281DRAFT_03608 - farnesyl-diphosphate farnesyltransferase, at 116,800 to 117,648 _03608 H281DRAFT_03609: H281DRAFT_03609 - squalene-associated FAD-dependent desaturase, at 117,671 to 118,921 _03609 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 115.831 kb on + strand, within H281DRAFT_03607at 115.831 kb on + strand, within H281DRAFT_03607at 115.831 kb on + strand, within H281DRAFT_03607at 115.832 kb on - strand, within H281DRAFT_03607at 115.832 kb on - strand, within H281DRAFT_03607at 115.832 kb on - strand, within H281DRAFT_03607at 115.879 kb on + strand, within H281DRAFT_03607at 115.879 kb on + strand, within H281DRAFT_03607at 115.879 kb on + strand, within H281DRAFT_03607at 115.879 kb on + strand, within H281DRAFT_03607at 116.018 kb on - strand, within H281DRAFT_03607at 116.086 kb on + strand, within H281DRAFT_03607at 116.086 kb on + strand, within H281DRAFT_03607at 116.105 kb on - strand, within H281DRAFT_03607at 116.428 kb on + strandat 116.429 kb on - strandat 116.429 kb on - strandat 116.464 kb on + strandat 116.509 kb on + strandat 116.509 kb on + strandat 116.509 kb on + strandat 116.536 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.670 kb on + strandat 116.807 kb on + strandat 117.340 kb on + strand, within H281DRAFT_03608at 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.666 kb on + strandat 117.667 kb on - strandat 117.667 kb on - strandat 117.785 kb on + strandat 117.860 kb on + strand, within H281DRAFT_03609at 117.871 kb on + strand, within H281DRAFT_03609at 118.031 kb on + strand, within H281DRAFT_03609at 118.610 kb on + strand, within H281DRAFT_03609

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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115,831 + H281DRAFT_03607 0.27 -1.8
115,831 + H281DRAFT_03607 0.27 -0.9
115,831 + H281DRAFT_03607 0.27 -0.0
115,832 - H281DRAFT_03607 0.28 -0.3
115,832 - H281DRAFT_03607 0.28 +0.8
115,832 - H281DRAFT_03607 0.28 +0.5
115,879 + H281DRAFT_03607 0.33 +1.0
115,879 + H281DRAFT_03607 0.33 +0.5
115,879 + H281DRAFT_03607 0.33 +0.1
115,879 + H281DRAFT_03607 0.33 -0.9
116,018 - H281DRAFT_03607 0.47 -1.2
116,086 + H281DRAFT_03607 0.55 -0.4
116,086 + H281DRAFT_03607 0.55 +0.1
116,105 - H281DRAFT_03607 0.57 -1.3
116,428 + +0.5
116,429 - -0.6
116,429 - +0.6
116,464 + -0.5
116,509 + +0.4
116,509 + +0.3
116,509 + -0.2
116,536 + +0.2
116,670 + +0.4
116,670 + -0.0
116,670 + +0.4
116,670 + +1.0
116,807 + +0.0
117,340 + H281DRAFT_03608 0.64 +1.5
117,666 + -0.1
117,666 + -0.8
117,666 + -0.1
117,666 + -0.3
117,666 + +0.8
117,666 + -0.2
117,667 - -2.4
117,667 - -1.4
117,785 + +0.2
117,860 + H281DRAFT_03609 0.15 -0.3
117,871 + H281DRAFT_03609 0.16 -0.4
118,031 + H281DRAFT_03609 0.29 -0.4
118,610 + H281DRAFT_03609 0.75 -0.2

Or see this region's nucleotide sequence