Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03414

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03413 and H281DRAFT_03414 are separated by 154 nucleotidesH281DRAFT_03414 and H281DRAFT_03415 are separated by 121 nucleotides H281DRAFT_03413: H281DRAFT_03413 - high affinity sulphate transporter 1, at 483,288 to 485,081 _03413 H281DRAFT_03414: H281DRAFT_03414 - outer membrane surface antigen, at 485,236 to 485,766 _03414 H281DRAFT_03415: H281DRAFT_03415 - polyphosphate kinase 2, PA0141 family, at 485,888 to 486,703 _03415 Position (kb) 485 486Strain fitness (log2 ratio) -1 0 1at 484.670 kb on + strand, within H281DRAFT_03413at 484.671 kb on - strand, within H281DRAFT_03413at 484.876 kb on + strand, within H281DRAFT_03413at 484.876 kb on + strand, within H281DRAFT_03413at 484.988 kb on - strandat 485.189 kb on + strandat 485.197 kb on - strandat 485.626 kb on - strand, within H281DRAFT_03414at 485.802 kb on + strandat 485.802 kb on + strandat 485.804 kb on + strandat 486.017 kb on - strand, within H281DRAFT_03415at 486.299 kb on + strand, within H281DRAFT_03415at 486.430 kb on - strand, within H281DRAFT_03415at 486.482 kb on + strand, within H281DRAFT_03415

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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484,670 + H281DRAFT_03413 0.77 +0.8
484,671 - H281DRAFT_03413 0.77 +1.6
484,876 + H281DRAFT_03413 0.89 -0.1
484,876 + H281DRAFT_03413 0.89 +0.5
484,988 - +1.5
485,189 + -0.8
485,197 - -0.1
485,626 - H281DRAFT_03414 0.73 +0.9
485,802 + +0.3
485,802 + -0.3
485,804 + +0.3
486,017 - H281DRAFT_03415 0.16 +0.7
486,299 + H281DRAFT_03415 0.50 -0.0
486,430 - H281DRAFT_03415 0.66 +0.2
486,482 + H281DRAFT_03415 0.73 +0.1

Or see this region's nucleotide sequence