Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03107 and H281DRAFT_03108 are separated by 127 nucleotides H281DRAFT_03108 and H281DRAFT_03109 overlap by 4 nucleotides H281DRAFT_03109 and H281DRAFT_03110 are separated by 75 nucleotides H281DRAFT_03110 and H281DRAFT_03111 are separated by 16 nucleotides H281DRAFT_03111 and H281DRAFT_03112 are separated by 7 nucleotides
H281DRAFT_03107: H281DRAFT_03107 - two component transcriptional regulator, LuxR family, at 143,521 to 144,153
_03107
H281DRAFT_03108: H281DRAFT_03108 - hypothetical protein, at 144,281 to 144,559
_03108
H281DRAFT_03109: H281DRAFT_03109 - hypothetical protein, at 144,556 to 144,765
_03109
H281DRAFT_03110: H281DRAFT_03110 - concentrative nucleoside transporter, CNT family, at 144,841 to 146,118
_03110
H281DRAFT_03111: H281DRAFT_03111 - cytidine deaminase, at 146,135 to 146,524
_03111
H281DRAFT_03112: H281DRAFT_03112 - Inosine-uridine nucleoside N-ribohydrolase, at 146,532 to 147,497
_03112
Position (kb) 144
145
146
147 Strain fitness (log2 ratio) -1
0
1 at 144.155 kb on + strand at 144.184 kb on - strand at 144.184 kb on - strand at 144.399 kb on + strand, within H281DRAFT_03108 at 144.606 kb on + strand, within H281DRAFT_03109 at 144.763 kb on + strand at 144.878 kb on + strand at 144.979 kb on - strand, within H281DRAFT_03110 at 145.193 kb on - strand, within H281DRAFT_03110 at 145.846 kb on + strand, within H281DRAFT_03110 at 146.107 kb on - strand at 146.302 kb on + strand, within H281DRAFT_03111 at 146.517 kb on - strand at 146.521 kb on - strand at 146.554 kb on - strand at 146.633 kb on - strand, within H281DRAFT_03112
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 144,155 + +1.4 144,184 - +0.0 144,184 - -0.1 144,399 + H281DRAFT_03108 0.42 -0.0 144,606 + H281DRAFT_03109 0.24 +0.7 144,763 + -0.8 144,878 + -0.2 144,979 - H281DRAFT_03110 0.11 +0.3 145,193 - H281DRAFT_03110 0.28 +1.0 145,846 + H281DRAFT_03110 0.79 +0.6 146,107 - -1.2 146,302 + H281DRAFT_03111 0.43 -1.4 146,517 - +0.0 146,521 - +1.4 146,554 - -0.3 146,633 - H281DRAFT_03112 0.10 +0.2
Or see this region's nucleotide sequence