Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02704

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02703 and H281DRAFT_02704 overlap by 4 nucleotidesH281DRAFT_02704 and H281DRAFT_02705 are separated by 60 nucleotides H281DRAFT_02703: H281DRAFT_02703 - monosaccharide ABC transporter membrane protein, CUT2 family, at 285,959 to 286,960 _02703 H281DRAFT_02704: H281DRAFT_02704 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 286,957 to 288,492 _02704 H281DRAFT_02705: H281DRAFT_02705 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 288,553 to 289,650 _02705 Position (kb) 286 287 288 289Strain fitness (log2 ratio) -2 -1 0 1at 286.382 kb on + strand, within H281DRAFT_02703at 286.382 kb on + strand, within H281DRAFT_02703at 286.406 kb on + strand, within H281DRAFT_02703at 286.735 kb on + strand, within H281DRAFT_02703at 286.736 kb on - strand, within H281DRAFT_02703at 286.807 kb on + strand, within H281DRAFT_02703at 287.045 kb on + strandat 287.147 kb on + strand, within H281DRAFT_02704at 287.379 kb on + strand, within H281DRAFT_02704at 287.457 kb on - strand, within H281DRAFT_02704at 287.521 kb on + strand, within H281DRAFT_02704at 287.910 kb on - strand, within H281DRAFT_02704at 288.554 kb on + strandat 288.584 kb on + strandat 288.922 kb on - strand, within H281DRAFT_02705

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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286,382 + H281DRAFT_02703 0.42 +0.4
286,382 + H281DRAFT_02703 0.42 +0.2
286,406 + H281DRAFT_02703 0.45 -0.1
286,735 + H281DRAFT_02703 0.77 +0.1
286,736 - H281DRAFT_02703 0.78 +0.8
286,807 + H281DRAFT_02703 0.85 -0.7
287,045 + +0.4
287,147 + H281DRAFT_02704 0.12 +0.8
287,379 + H281DRAFT_02704 0.27 +0.5
287,457 - H281DRAFT_02704 0.33 +0.9
287,521 + H281DRAFT_02704 0.37 +0.7
287,910 - H281DRAFT_02704 0.62 +0.2
288,554 + +0.3
288,584 + -2.3
288,922 - H281DRAFT_02705 0.34 -0.5

Or see this region's nucleotide sequence