Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02324 and H281DRAFT_02325 are separated by 150 nucleotides H281DRAFT_02325 and H281DRAFT_02326 are separated by 138 nucleotides H281DRAFT_02326 and H281DRAFT_02327 are separated by 72 nucleotides H281DRAFT_02327 and H281DRAFT_02328 are separated by 501 nucleotides
H281DRAFT_02324: H281DRAFT_02324 - pyruvate dehydrogenase E1 component, at 479,211 to 481,946
_02324
H281DRAFT_02325: H281DRAFT_02325 - transcriptional regulator, AsnC family, at 482,097 to 482,624
_02325
H281DRAFT_02326: H281DRAFT_02326 - histidine triad (HIT) family protein, at 482,763 to 483,188
_02326
H281DRAFT_02327: H281DRAFT_02327 - hypothetical protein, at 483,261 to 483,440
_02327
H281DRAFT_02328: H281DRAFT_02328 - hypothetical protein, at 483,942 to 484,280
_02328
Position (kb) 482
483
484 Strain fitness (log2 ratio) -2
-1
0
1
2 at 481.914 kb on + strand at 481.946 kb on + strand at 481.946 kb on + strand at 481.946 kb on + strand at 481.996 kb on + strand at 482.060 kb on - strand at 482.323 kb on + strand, within H281DRAFT_02325 at 482.323 kb on + strand, within H281DRAFT_02325 at 482.324 kb on - strand, within H281DRAFT_02325 at 482.403 kb on + strand, within H281DRAFT_02325 at 482.403 kb on + strand, within H281DRAFT_02325 at 482.404 kb on - strand at 482.427 kb on + strand, within H281DRAFT_02325 at 482.547 kb on + strand at 482.548 kb on - strand, within H281DRAFT_02325 at 482.549 kb on + strand, within H281DRAFT_02325 at 482.549 kb on + strand, within H281DRAFT_02325 at 482.550 kb on - strand, within H281DRAFT_02325 at 482.550 kb on - strand, within H281DRAFT_02325 at 482.550 kb on - strand, within H281DRAFT_02325 at 482.550 kb on - strand, within H281DRAFT_02325 at 482.550 kb on - strand, within H281DRAFT_02325 at 482.581 kb on + strand at 482.677 kb on + strand at 482.677 kb on + strand at 482.678 kb on - strand at 482.678 kb on - strand at 482.678 kb on - strand at 482.678 kb on - strand at 482.680 kb on + strand at 482.680 kb on + strand at 482.681 kb on - strand at 482.697 kb on - strand at 482.769 kb on + strand at 482.813 kb on - strand, within H281DRAFT_02326 at 482.813 kb on - strand, within H281DRAFT_02326 at 483.103 kb on + strand, within H281DRAFT_02326 at 483.104 kb on - strand, within H281DRAFT_02326 at 483.229 kb on + strand at 483.229 kb on + strand at 483.229 kb on + strand at 483.263 kb on - strand at 483.472 kb on + strand at 483.473 kb on - strand at 483.477 kb on + strand at 483.477 kb on + strand at 483.478 kb on - strand at 483.478 kb on - strand at 483.478 kb on - strand at 483.491 kb on + strand at 483.492 kb on - strand at 483.569 kb on + strand at 483.647 kb on - strand at 483.650 kb on - strand at 483.650 kb on - strand at 483.681 kb on + strand at 483.738 kb on + strand at 483.738 kb on + strand at 483.747 kb on + strand at 483.747 kb on + strand at 483.748 kb on - strand at 483.786 kb on + strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.787 kb on - strand at 483.864 kb on - strand at 483.896 kb on - strand at 483.896 kb on - strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.899 kb on + strand at 483.900 kb on - strand at 483.900 kb on - strand at 483.903 kb on + strand at 483.903 kb on + strand at 483.903 kb on + strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.904 kb on - strand at 483.941 kb on + strand at 483.941 kb on + strand at 483.942 kb on - strand at 483.942 kb on - strand at 484.057 kb on - strand, within H281DRAFT_02328
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 481,914 + +0.4 481,946 + -0.1 481,946 + -0.2 481,946 + -0.1 481,996 + -1.3 482,060 - +0.1 482,323 + H281DRAFT_02325 0.43 -0.8 482,323 + H281DRAFT_02325 0.43 +0.5 482,324 - H281DRAFT_02325 0.43 -0.6 482,403 + H281DRAFT_02325 0.58 +0.0 482,403 + H281DRAFT_02325 0.58 -0.7 482,404 - +2.3 482,427 + H281DRAFT_02325 0.62 -0.0 482,547 + +0.6 482,548 - H281DRAFT_02325 0.85 +0.2 482,549 + H281DRAFT_02325 0.86 +0.6 482,549 + H281DRAFT_02325 0.86 +0.2 482,550 - H281DRAFT_02325 0.86 +0.4 482,550 - H281DRAFT_02325 0.86 -0.3 482,550 - H281DRAFT_02325 0.86 +0.7 482,550 - H281DRAFT_02325 0.86 -0.0 482,550 - H281DRAFT_02325 0.86 -0.5 482,581 + +0.4 482,677 + -0.4 482,677 + -1.8 482,678 - +1.3 482,678 - +0.6 482,678 - -0.2 482,678 - -1.1 482,680 + +0.3 482,680 + -0.1 482,681 - -0.4 482,697 - +0.2 482,769 + -0.3 482,813 - H281DRAFT_02326 0.12 +0.2 482,813 - H281DRAFT_02326 0.12 +0.3 483,103 + H281DRAFT_02326 0.80 +0.2 483,104 - H281DRAFT_02326 0.80 +1.0 483,229 + -0.6 483,229 + -0.1 483,229 + +0.2 483,263 - -0.6 483,472 + +0.2 483,473 - +0.3 483,477 + +1.0 483,477 + -0.3 483,478 - -0.0 483,478 - +0.1 483,478 - -0.0 483,491 + -0.1 483,492 - +0.6 483,569 + -0.3 483,647 - +1.1 483,650 - -0.2 483,650 - -0.3 483,681 + -0.1 483,738 + +0.5 483,738 + +0.9 483,747 + +1.0 483,747 + -0.4 483,748 - -0.2 483,786 + +0.7 483,787 - +0.2 483,787 - -0.1 483,787 - +0.3 483,787 - -0.8 483,787 - -0.0 483,864 - +0.1 483,896 - +0.1 483,896 - +0.1 483,899 + +0.0 483,899 + -0.9 483,899 + -0.4 483,899 + -0.3 483,899 + +0.9 483,899 + -0.4 483,899 + +0.0 483,899 + +0.5 483,900 - +0.2 483,900 - -0.1 483,903 + +0.5 483,903 + +0.0 483,903 + +0.2 483,904 - +0.3 483,904 - +0.6 483,904 - +0.6 483,904 - +0.0 483,941 + +0.4 483,941 + -0.2 483,942 - +0.2 483,942 - +0.4 484,057 - H281DRAFT_02328 0.34 +0.9
Or see this region's nucleotide sequence