Experiment: 3-Hydroxypropionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02286 and H281DRAFT_02287 are separated by 94 nucleotides H281DRAFT_02287 and H281DRAFT_02288 are separated by 285 nucleotides
H281DRAFT_02286: H281DRAFT_02286 - catecholate siderophore receptor, at 430,878 to 433,091
_02286
H281DRAFT_02287: H281DRAFT_02287 - PKHD-type hydroxylase, at 433,186 to 433,872
_02287
H281DRAFT_02288: H281DRAFT_02288 - Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin), at 434,158 to 434,811
_02288
Position (kb) 433
434 Strain fitness (log2 ratio) -2
-1
0
1
2 at 432.379 kb on - strand, within H281DRAFT_02286 at 432.433 kb on - strand, within H281DRAFT_02286 at 432.435 kb on + strand, within H281DRAFT_02286 at 432.435 kb on + strand, within H281DRAFT_02286 at 432.436 kb on - strand, within H281DRAFT_02286 at 432.436 kb on - strand, within H281DRAFT_02286 at 432.450 kb on - strand, within H281DRAFT_02286 at 432.450 kb on - strand, within H281DRAFT_02286 at 432.458 kb on + strand, within H281DRAFT_02286 at 432.529 kb on - strand, within H281DRAFT_02286 at 432.529 kb on - strand, within H281DRAFT_02286 at 432.636 kb on + strand, within H281DRAFT_02286 at 432.729 kb on + strand, within H281DRAFT_02286 at 432.729 kb on + strand, within H281DRAFT_02286 at 432.730 kb on - strand, within H281DRAFT_02286 at 432.730 kb on - strand, within H281DRAFT_02286 at 432.823 kb on - strand, within H281DRAFT_02286 at 432.864 kb on + strand, within H281DRAFT_02286 at 432.864 kb on + strand, within H281DRAFT_02286 at 432.865 kb on - strand, within H281DRAFT_02286 at 432.999 kb on + strand at 432.999 kb on + strand at 433.000 kb on - strand at 433.000 kb on - strand at 433.000 kb on - strand at 433.000 kb on - strand at 433.003 kb on - strand at 433.003 kb on - strand at 433.072 kb on + strand at 433.208 kb on + strand at 433.208 kb on + strand at 433.208 kb on + strand at 433.208 kb on + strand at 433.208 kb on + strand at 433.704 kb on + strand, within H281DRAFT_02287 at 433.705 kb on - strand, within H281DRAFT_02287 at 433.870 kb on + strand at 433.870 kb on + strand at 433.870 kb on + strand at 433.871 kb on - strand at 433.934 kb on - strand at 434.288 kb on + strand, within H281DRAFT_02288 at 434.479 kb on + strand, within H281DRAFT_02288 at 434.480 kb on - strand, within H281DRAFT_02288 at 434.480 kb on - strand at 434.540 kb on + strand, within H281DRAFT_02288 at 434.594 kb on - strand, within H281DRAFT_02288 at 434.628 kb on - strand, within H281DRAFT_02288 at 434.628 kb on - strand, within H281DRAFT_02288 at 434.668 kb on - strand, within H281DRAFT_02288 at 434.668 kb on - strand, within H281DRAFT_02288 at 434.668 kb on - strand, within H281DRAFT_02288 at 434.752 kb on + strand at 434.783 kb on - strand at 434.783 kb on - strand at 434.783 kb on - strand at 434.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C) remove 432,379 - H281DRAFT_02286 0.68 +0.7 432,433 - H281DRAFT_02286 0.70 +0.8 432,435 + H281DRAFT_02286 0.70 -0.8 432,435 + H281DRAFT_02286 0.70 -1.6 432,436 - H281DRAFT_02286 0.70 +0.1 432,436 - H281DRAFT_02286 0.70 +0.8 432,450 - H281DRAFT_02286 0.71 -0.3 432,450 - H281DRAFT_02286 0.71 -0.1 432,458 + H281DRAFT_02286 0.71 +1.9 432,529 - H281DRAFT_02286 0.75 -0.8 432,529 - H281DRAFT_02286 0.75 -0.0 432,636 + H281DRAFT_02286 0.79 +0.2 432,729 + H281DRAFT_02286 0.84 -0.3 432,729 + H281DRAFT_02286 0.84 -0.0 432,730 - H281DRAFT_02286 0.84 +0.2 432,730 - H281DRAFT_02286 0.84 +0.8 432,823 - H281DRAFT_02286 0.88 -0.2 432,864 + H281DRAFT_02286 0.90 +0.3 432,864 + H281DRAFT_02286 0.90 -0.6 432,865 - H281DRAFT_02286 0.90 +0.4 432,999 + -0.1 432,999 + -1.0 433,000 - +0.5 433,000 - -0.0 433,000 - +0.9 433,000 - -0.3 433,003 - -0.1 433,003 - +0.3 433,072 + -1.0 433,208 + +0.5 433,208 + -0.7 433,208 + +0.4 433,208 + -1.1 433,208 + -2.6 433,704 + H281DRAFT_02287 0.75 +0.2 433,705 - H281DRAFT_02287 0.76 +1.3 433,870 + +0.2 433,870 + -0.5 433,870 + -0.4 433,871 - -0.0 433,934 - -1.2 434,288 + H281DRAFT_02288 0.20 +0.6 434,479 + H281DRAFT_02288 0.49 +0.6 434,480 - H281DRAFT_02288 0.49 -1.1 434,480 - -0.9 434,540 + H281DRAFT_02288 0.58 +0.8 434,594 - H281DRAFT_02288 0.67 +0.2 434,628 - H281DRAFT_02288 0.72 +0.4 434,628 - H281DRAFT_02288 0.72 +0.1 434,668 - H281DRAFT_02288 0.78 +0.1 434,668 - H281DRAFT_02288 0.78 -0.6 434,668 - H281DRAFT_02288 0.78 +0.1 434,752 + -0.2 434,783 - -0.0 434,783 - +1.0 434,783 - +1.1 434,809 + -0.5
Or see this region's nucleotide sequence