Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02248

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02247 and H281DRAFT_02248 overlap by 4 nucleotidesH281DRAFT_02248 and H281DRAFT_02249 are separated by 33 nucleotidesH281DRAFT_02249 and H281DRAFT_02250 are separated by 200 nucleotides H281DRAFT_02247: H281DRAFT_02247 - D-3-phosphoglycerate dehydrogenase, at 395,170 to 396,183 _02247 H281DRAFT_02248: H281DRAFT_02248 - Predicted esterase of the alpha-beta hydrolase superfamily, at 396,180 to 397,043 _02248 H281DRAFT_02249: H281DRAFT_02249 - uncharacterized domain 1-containing protein, at 397,077 to 397,481 _02249 H281DRAFT_02250: H281DRAFT_02250 - tRNA_Lys_CTT, at 397,682 to 397,757 _02250 Position (kb) 396 397 398Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 395.262 kb on + strandat 395.433 kb on + strand, within H281DRAFT_02247at 395.434 kb on - strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.536 kb on + strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.537 kb on - strand, within H281DRAFT_02247at 395.544 kb on + strand, within H281DRAFT_02247at 395.759 kb on - strand, within H281DRAFT_02247at 395.983 kb on + strand, within H281DRAFT_02247at 395.984 kb on - strand, within H281DRAFT_02247at 395.984 kb on - strand, within H281DRAFT_02247at 395.984 kb on - strand, within H281DRAFT_02247at 396.011 kb on - strand, within H281DRAFT_02247at 396.011 kb on - strand, within H281DRAFT_02247at 396.058 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.076 kb on + strand, within H281DRAFT_02247at 396.077 kb on - strand, within H281DRAFT_02247at 396.077 kb on - strand, within H281DRAFT_02247at 396.085 kb on + strandat 396.085 kb on + strandat 396.086 kb on - strandat 396.181 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.250 kb on + strandat 396.251 kb on - strandat 396.251 kb on - strandat 396.251 kb on - strandat 396.280 kb on + strand, within H281DRAFT_02248at 396.281 kb on - strand, within H281DRAFT_02248at 396.322 kb on + strand, within H281DRAFT_02248at 396.322 kb on + strand, within H281DRAFT_02248at 396.323 kb on - strand, within H281DRAFT_02248at 396.374 kb on - strand, within H281DRAFT_02248at 396.396 kb on + strand, within H281DRAFT_02248at 396.396 kb on + strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.397 kb on - strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.605 kb on + strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.606 kb on - strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.643 kb on + strand, within H281DRAFT_02248at 396.644 kb on - strand, within H281DRAFT_02248at 396.644 kb on - strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.754 kb on + strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.755 kb on - strand, within H281DRAFT_02248at 396.778 kb on + strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.779 kb on - strand, within H281DRAFT_02248at 396.829 kb on + strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.830 kb on - strand, within H281DRAFT_02248at 396.852 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.865 kb on + strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.866 kb on - strand, within H281DRAFT_02248at 396.898 kb on + strand, within H281DRAFT_02248at 396.899 kb on - strand, within H281DRAFT_02248at 397.057 kb on - strandat 397.057 kb on - strandat 397.079 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.094 kb on - strandat 397.213 kb on - strand, within H281DRAFT_02249at 397.613 kb on + strandat 397.614 kb on - strandat 397.773 kb on + strandat 397.773 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.818 kb on + strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.819 kb on - strandat 397.830 kb on - strandat 397.830 kb on - strandat 397.838 kb on + strandat 397.838 kb on + strandat 397.839 kb on - strandat 397.839 kb on - strandat 397.839 kb on - strandat 397.858 kb on + strandat 397.858 kb on + strandat 397.858 kb on + strandat 397.859 kb on - strandat 397.859 kb on - strandat 397.859 kb on - strandat 397.867 kb on - strandat 397.999 kb on - strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.001 kb on + strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strandat 398.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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395,262 + +0.3
395,433 + H281DRAFT_02247 0.26 +0.5
395,434 - H281DRAFT_02247 0.26 -0.8
395,536 + H281DRAFT_02247 0.36 +0.5
395,536 + H281DRAFT_02247 0.36 -0.3
395,536 + H281DRAFT_02247 0.36 -0.0
395,537 - H281DRAFT_02247 0.36 -1.8
395,537 - H281DRAFT_02247 0.36 -0.9
395,537 - H281DRAFT_02247 0.36 -2.9
395,544 + H281DRAFT_02247 0.37 -0.0
395,759 - H281DRAFT_02247 0.58 -0.8
395,983 + H281DRAFT_02247 0.80 +0.3
395,984 - H281DRAFT_02247 0.80 -0.6
395,984 - H281DRAFT_02247 0.80 +0.1
395,984 - H281DRAFT_02247 0.80 -0.5
396,011 - H281DRAFT_02247 0.83 -1.0
396,011 - H281DRAFT_02247 0.83 +0.2
396,058 + H281DRAFT_02247 0.88 +0.1
396,076 + H281DRAFT_02247 0.89 -0.5
396,076 + H281DRAFT_02247 0.89 +1.1
396,076 + H281DRAFT_02247 0.89 -0.0
396,076 + H281DRAFT_02247 0.89 -0.1
396,076 + H281DRAFT_02247 0.89 +0.6
396,076 + H281DRAFT_02247 0.89 +0.6
396,077 - H281DRAFT_02247 0.89 +1.0
396,077 - H281DRAFT_02247 0.89 -0.7
396,085 + +0.2
396,085 + +0.4
396,086 - -0.7
396,181 + +0.3
396,250 + +0.3
396,250 + +0.1
396,250 + +0.1
396,250 + -0.3
396,250 + -1.2
396,250 + -0.2
396,250 + +0.8
396,250 + +0.3
396,251 - +0.1
396,251 - -1.8
396,251 - -0.1
396,280 + H281DRAFT_02248 0.12 -0.8
396,281 - H281DRAFT_02248 0.12 +0.4
396,322 + H281DRAFT_02248 0.16 +0.1
396,322 + H281DRAFT_02248 0.16 +0.1
396,323 - H281DRAFT_02248 0.17 +0.7
396,374 - H281DRAFT_02248 0.22 +0.6
396,396 + H281DRAFT_02248 0.25 +1.1
396,396 + H281DRAFT_02248 0.25 -0.9
396,397 - H281DRAFT_02248 0.25 -0.1
396,397 - H281DRAFT_02248 0.25 +0.4
396,397 - H281DRAFT_02248 0.25 -0.0
396,397 - H281DRAFT_02248 0.25 +0.3
396,605 + H281DRAFT_02248 0.49 +0.5
396,605 + H281DRAFT_02248 0.49 -0.1
396,605 + H281DRAFT_02248 0.49 +0.2
396,606 - H281DRAFT_02248 0.49 +0.1
396,606 - H281DRAFT_02248 0.49 -0.2
396,606 - H281DRAFT_02248 0.49 -0.3
396,643 + H281DRAFT_02248 0.54 -0.0
396,643 + H281DRAFT_02248 0.54 +0.2
396,643 + H281DRAFT_02248 0.54 +0.6
396,644 - H281DRAFT_02248 0.54 +0.3
396,644 - H281DRAFT_02248 0.54 -3.8
396,754 + H281DRAFT_02248 0.66 -0.2
396,754 + H281DRAFT_02248 0.66 +0.2
396,754 + H281DRAFT_02248 0.66 +0.9
396,754 + H281DRAFT_02248 0.66 -0.3
396,755 - H281DRAFT_02248 0.67 +0.1
396,755 - H281DRAFT_02248 0.67 -0.0
396,755 - H281DRAFT_02248 0.67 +0.4
396,778 + H281DRAFT_02248 0.69 -0.8
396,779 - H281DRAFT_02248 0.69 +0.3
396,779 - H281DRAFT_02248 0.69 -0.6
396,779 - H281DRAFT_02248 0.69 +0.1
396,829 + H281DRAFT_02248 0.75 -0.0
396,830 - H281DRAFT_02248 0.75 +0.0
396,830 - H281DRAFT_02248 0.75 -0.9
396,852 + H281DRAFT_02248 0.78 +0.5
396,865 + H281DRAFT_02248 0.79 -0.6
396,865 + H281DRAFT_02248 0.79 -0.1
396,866 - H281DRAFT_02248 0.79 +0.2
396,866 - H281DRAFT_02248 0.79 +0.2
396,898 + H281DRAFT_02248 0.83 +0.4
396,899 - H281DRAFT_02248 0.83 +0.8
397,057 - +0.1
397,057 - -1.6
397,079 - -0.1
397,094 - -0.3
397,094 - +0.6
397,094 - +0.5
397,094 - +0.6
397,213 - H281DRAFT_02249 0.34 +0.6
397,613 + -0.1
397,614 - -0.3
397,773 + -0.2
397,773 + -0.0
397,818 + +0.5
397,818 + +0.4
397,818 + +0.2
397,818 + -0.3
397,819 - +0.0
397,819 - -0.0
397,819 - +0.1
397,819 - +0.2
397,830 - +0.6
397,830 - +0.2
397,838 + -0.3
397,838 + -0.4
397,839 - +0.3
397,839 - -0.3
397,839 - +0.4
397,858 + -0.1
397,858 + +0.2
397,858 + +0.1
397,859 - +0.9
397,859 - -0.1
397,859 - +0.1
397,867 - -0.4
397,999 - +0.1
398,001 + -0.2
398,001 + +0.1
398,001 + +1.1
398,001 + +0.1
398,001 + -1.1
398,002 - +0.1
398,002 - +0.1
398,002 - +0.4
398,002 - -0.2
398,002 - +0.3
398,002 - +0.2
398,002 - -0.7

Or see this region's nucleotide sequence