Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02192

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02190 and H281DRAFT_02191 are separated by 98 nucleotidesH281DRAFT_02191 and H281DRAFT_02192 are separated by 130 nucleotidesH281DRAFT_02192 and H281DRAFT_02193 are separated by 308 nucleotidesH281DRAFT_02193 and H281DRAFT_02194 are separated by 60 nucleotides H281DRAFT_02190: H281DRAFT_02190 - Ser/Thr protein kinase RdoA involved in Cpx stress response, MazF antagonist, at 332,043 to 333,068 _02190 H281DRAFT_02191: H281DRAFT_02191 - hypothetical protein, at 333,167 to 333,694 _02191 H281DRAFT_02192: H281DRAFT_02192 - MFS transporter, YNFM family, putative membrane transport protein, at 333,825 to 335,030 _02192 H281DRAFT_02193: H281DRAFT_02193 - hypothetical protein, at 335,339 to 335,524 _02193 H281DRAFT_02194: H281DRAFT_02194 - L-glyceraldehyde 3-phosphate reductase, at 335,585 to 336,628 _02194 Position (kb) 333 334 335 336Strain fitness (log2 ratio) -2 -1 0 1at 332.860 kb on + strand, within H281DRAFT_02190at 332.860 kb on + strand, within H281DRAFT_02190at 332.861 kb on - strand, within H281DRAFT_02190at 332.905 kb on + strand, within H281DRAFT_02190at 332.905 kb on + strand, within H281DRAFT_02190at 332.920 kb on + strand, within H281DRAFT_02190at 332.920 kb on + strand, within H281DRAFT_02190at 332.921 kb on - strand, within H281DRAFT_02190at 332.939 kb on + strand, within H281DRAFT_02190at 332.939 kb on + strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.940 kb on - strand, within H281DRAFT_02190at 332.951 kb on + strand, within H281DRAFT_02190at 332.955 kb on + strand, within H281DRAFT_02190at 332.956 kb on - strand, within H281DRAFT_02190at 333.276 kb on + strand, within H281DRAFT_02191at 333.277 kb on - strand, within H281DRAFT_02191at 333.410 kb on + strand, within H281DRAFT_02191at 333.410 kb on + strand, within H281DRAFT_02191at 333.410 kb on + strand, within H281DRAFT_02191at 333.411 kb on - strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.412 kb on + strand, within H281DRAFT_02191at 333.438 kb on + strand, within H281DRAFT_02191at 333.438 kb on + strand, within H281DRAFT_02191at 333.439 kb on - strand, within H281DRAFT_02191at 333.459 kb on - strand, within H281DRAFT_02191at 333.494 kb on + strand, within H281DRAFT_02191at 333.495 kb on - strand, within H281DRAFT_02191at 333.495 kb on - strand, within H281DRAFT_02191at 333.495 kb on - strand, within H281DRAFT_02191at 333.618 kb on + strand, within H281DRAFT_02191at 333.618 kb on + strand, within H281DRAFT_02191at 333.619 kb on - strand, within H281DRAFT_02191at 333.619 kb on - strand, within H281DRAFT_02191at 333.638 kb on + strand, within H281DRAFT_02191at 333.709 kb on + strandat 333.710 kb on - strandat 333.710 kb on - strandat 333.767 kb on + strandat 333.768 kb on - strandat 333.768 kb on - strandat 333.849 kb on + strandat 333.850 kb on - strandat 333.930 kb on + strandat 333.931 kb on - strandat 334.215 kb on + strand, within H281DRAFT_02192at 334.215 kb on + strand, within H281DRAFT_02192at 334.215 kb on + strand, within H281DRAFT_02192at 334.216 kb on - strand, within H281DRAFT_02192at 334.267 kb on - strand, within H281DRAFT_02192at 334.267 kb on - strandat 334.267 kb on - strand, within H281DRAFT_02192at 334.286 kb on - strand, within H281DRAFT_02192at 334.548 kb on + strand, within H281DRAFT_02192at 334.548 kb on + strand, within H281DRAFT_02192at 334.548 kb on + strand, within H281DRAFT_02192at 334.554 kb on + strand, within H281DRAFT_02192at 334.554 kb on + strand, within H281DRAFT_02192at 334.554 kb on + strand, within H281DRAFT_02192at 334.554 kb on + strand, within H281DRAFT_02192at 334.555 kb on - strand, within H281DRAFT_02192at 334.555 kb on - strand, within H281DRAFT_02192at 334.555 kb on - strand, within H281DRAFT_02192at 334.555 kb on - strand, within H281DRAFT_02192at 334.555 kb on - strand, within H281DRAFT_02192at 334.555 kb on - strand, within H281DRAFT_02192at 334.626 kb on + strand, within H281DRAFT_02192at 334.626 kb on + strand, within H281DRAFT_02192at 334.626 kb on + strand, within H281DRAFT_02192at 334.627 kb on - strand, within H281DRAFT_02192at 334.627 kb on - strand, within H281DRAFT_02192at 334.627 kb on - strand, within H281DRAFT_02192at 334.872 kb on + strand, within H281DRAFT_02192at 334.873 kb on - strand, within H281DRAFT_02192at 334.884 kb on + strand, within H281DRAFT_02192at 334.884 kb on + strand, within H281DRAFT_02192at 334.884 kb on + strandat 334.884 kb on + strand, within H281DRAFT_02192at 334.885 kb on - strand, within H281DRAFT_02192at 334.885 kb on - strand, within H281DRAFT_02192at 334.887 kb on + strand, within H281DRAFT_02192at 334.887 kb on + strand, within H281DRAFT_02192at 334.887 kb on + strand, within H281DRAFT_02192at 334.887 kb on + strand, within H281DRAFT_02192at 334.887 kb on + strand, within H281DRAFT_02192at 334.915 kb on - strandat 335.227 kb on - strandat 335.240 kb on - strandat 335.260 kb on + strandat 335.260 kb on + strandat 335.260 kb on + strandat 335.260 kb on + strandat 335.260 kb on + strandat 335.260 kb on + strandat 335.261 kb on - strandat 335.261 kb on - strandat 335.261 kb on - strandat 335.261 kb on - strandat 335.261 kb on - strandat 335.263 kb on - strandat 335.263 kb on - strandat 335.338 kb on + strandat 335.338 kb on + strandat 335.338 kb on + strandat 335.338 kb on + strandat 335.339 kb on - strandat 335.409 kb on + strand, within H281DRAFT_02193at 335.479 kb on - strand, within H281DRAFT_02193at 335.520 kb on + strandat 335.520 kb on + strandat 335.834 kb on + strand, within H281DRAFT_02194at 335.834 kb on + strand, within H281DRAFT_02194at 335.834 kb on + strand, within H281DRAFT_02194at 335.835 kb on - strand, within H281DRAFT_02194at 335.835 kb on - strand, within H281DRAFT_02194at 335.835 kb on - strand, within H281DRAFT_02194at 335.835 kb on - strand, within H281DRAFT_02194at 335.928 kb on + strand, within H281DRAFT_02194at 335.928 kb on + strand, within H281DRAFT_02194at 335.928 kb on + strand, within H281DRAFT_02194at 335.929 kb on - strand, within H281DRAFT_02194at 335.929 kb on - strand, within H281DRAFT_02194

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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332,860 + H281DRAFT_02190 0.80 -0.1
332,860 + H281DRAFT_02190 0.80 -0.5
332,861 - H281DRAFT_02190 0.80 +0.1
332,905 + H281DRAFT_02190 0.84 +0.1
332,905 + H281DRAFT_02190 0.84 -0.4
332,920 + H281DRAFT_02190 0.85 +0.4
332,920 + H281DRAFT_02190 0.85 -0.9
332,921 - H281DRAFT_02190 0.86 -0.1
332,939 + H281DRAFT_02190 0.87 +0.8
332,939 + H281DRAFT_02190 0.87 -0.4
332,940 - H281DRAFT_02190 0.87 -0.8
332,940 - H281DRAFT_02190 0.87 +0.2
332,940 - H281DRAFT_02190 0.87 -0.5
332,940 - H281DRAFT_02190 0.87 -0.3
332,951 + H281DRAFT_02190 0.88 +1.0
332,955 + H281DRAFT_02190 0.89 -0.7
332,956 - H281DRAFT_02190 0.89 +0.5
333,276 + H281DRAFT_02191 0.21 -1.5
333,277 - H281DRAFT_02191 0.21 -0.5
333,410 + H281DRAFT_02191 0.46 -0.8
333,410 + H281DRAFT_02191 0.46 -0.9
333,410 + H281DRAFT_02191 0.46 -1.1
333,411 - H281DRAFT_02191 0.46 +0.1
333,412 + H281DRAFT_02191 0.46 +0.3
333,412 + H281DRAFT_02191 0.46 -1.1
333,412 + H281DRAFT_02191 0.46 -2.3
333,412 + H281DRAFT_02191 0.46 -0.8
333,412 + H281DRAFT_02191 0.46 +0.3
333,438 + H281DRAFT_02191 0.51 -1.0
333,438 + H281DRAFT_02191 0.51 -0.2
333,439 - H281DRAFT_02191 0.52 -1.3
333,459 - H281DRAFT_02191 0.55 +0.2
333,494 + H281DRAFT_02191 0.62 -1.4
333,495 - H281DRAFT_02191 0.62 -0.0
333,495 - H281DRAFT_02191 0.62 +0.6
333,495 - H281DRAFT_02191 0.62 -0.5
333,618 + H281DRAFT_02191 0.85 -0.1
333,618 + H281DRAFT_02191 0.85 -1.6
333,619 - H281DRAFT_02191 0.86 +0.5
333,619 - H281DRAFT_02191 0.86 -1.0
333,638 + H281DRAFT_02191 0.89 +0.3
333,709 + +0.3
333,710 - -1.0
333,710 - -0.5
333,767 + +0.0
333,768 - -0.7
333,768 - +0.3
333,849 + +0.9
333,850 - +0.1
333,930 + -0.3
333,931 - +0.1
334,215 + H281DRAFT_02192 0.32 -0.3
334,215 + H281DRAFT_02192 0.32 -1.0
334,215 + H281DRAFT_02192 0.32 -1.3
334,216 - H281DRAFT_02192 0.32 +0.1
334,267 - H281DRAFT_02192 0.37 +0.2
334,267 - +0.7
334,267 - H281DRAFT_02192 0.37 -0.6
334,286 - H281DRAFT_02192 0.38 -0.1
334,548 + H281DRAFT_02192 0.60 -0.4
334,548 + H281DRAFT_02192 0.60 +0.9
334,548 + H281DRAFT_02192 0.60 -0.0
334,554 + H281DRAFT_02192 0.60 +0.3
334,554 + H281DRAFT_02192 0.60 +0.1
334,554 + H281DRAFT_02192 0.60 +0.0
334,554 + H281DRAFT_02192 0.60 -0.3
334,555 - H281DRAFT_02192 0.61 +0.0
334,555 - H281DRAFT_02192 0.61 +0.8
334,555 - H281DRAFT_02192 0.61 -0.1
334,555 - H281DRAFT_02192 0.61 -0.1
334,555 - H281DRAFT_02192 0.61 +0.5
334,555 - H281DRAFT_02192 0.61 +0.1
334,626 + H281DRAFT_02192 0.66 -0.4
334,626 + H281DRAFT_02192 0.66 -2.6
334,626 + H281DRAFT_02192 0.66 -0.4
334,627 - H281DRAFT_02192 0.67 +0.3
334,627 - H281DRAFT_02192 0.67 +0.0
334,627 - H281DRAFT_02192 0.67 +0.6
334,872 + H281DRAFT_02192 0.87 -0.2
334,873 - H281DRAFT_02192 0.87 -0.1
334,884 + H281DRAFT_02192 0.88 -1.9
334,884 + H281DRAFT_02192 0.88 -0.4
334,884 + -1.2
334,884 + H281DRAFT_02192 0.88 +0.1
334,885 - H281DRAFT_02192 0.88 -0.1
334,885 - H281DRAFT_02192 0.88 -1.1
334,887 + H281DRAFT_02192 0.88 +0.4
334,887 + H281DRAFT_02192 0.88 +0.0
334,887 + H281DRAFT_02192 0.88 +0.7
334,887 + H281DRAFT_02192 0.88 -0.1
334,887 + H281DRAFT_02192 0.88 +1.1
334,915 - -0.0
335,227 - -0.0
335,240 - +0.3
335,260 + -0.0
335,260 + -0.5
335,260 + +0.9
335,260 + -0.1
335,260 + +0.3
335,260 + -1.0
335,261 - -0.8
335,261 - -0.6
335,261 - -0.2
335,261 - +1.2
335,261 - +0.0
335,263 - +0.4
335,263 - -0.6
335,338 + -0.1
335,338 + -0.1
335,338 + +0.1
335,338 + -0.1
335,339 - -0.5
335,409 + H281DRAFT_02193 0.38 -2.1
335,479 - H281DRAFT_02193 0.75 +0.0
335,520 + -0.0
335,520 + +0.2
335,834 + H281DRAFT_02194 0.24 +0.0
335,834 + H281DRAFT_02194 0.24 +0.6
335,834 + H281DRAFT_02194 0.24 +0.3
335,835 - H281DRAFT_02194 0.24 -0.1
335,835 - H281DRAFT_02194 0.24 +0.2
335,835 - H281DRAFT_02194 0.24 +0.2
335,835 - H281DRAFT_02194 0.24 -0.2
335,928 + H281DRAFT_02194 0.33 -0.0
335,928 + H281DRAFT_02194 0.33 +0.7
335,928 + H281DRAFT_02194 0.33 +0.4
335,929 - H281DRAFT_02194 0.33 -0.3
335,929 - H281DRAFT_02194 0.33 +0.2

Or see this region's nucleotide sequence