Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01354

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01353 and H281DRAFT_01354 are separated by 264 nucleotidesH281DRAFT_01354 and H281DRAFT_01355 are separated by 142 nucleotides H281DRAFT_01353: H281DRAFT_01353 - Predicted dithiol-disulfide oxidoreductase, DUF899 family, at 196,438 to 197,166 _01353 H281DRAFT_01354: H281DRAFT_01354 - DNA-binding transcriptional regulator, LysR family, at 197,431 to 198,357 _01354 H281DRAFT_01355: H281DRAFT_01355 - Predicted arabinose efflux permease, MFS family, at 198,500 to 199,750 _01355 Position (kb) 197 198 199Strain fitness (log2 ratio) -1 0 1at 196.439 kb on + strandat 196.628 kb on - strand, within H281DRAFT_01353at 196.689 kb on + strand, within H281DRAFT_01353at 196.689 kb on + strand, within H281DRAFT_01353at 196.707 kb on - strand, within H281DRAFT_01353at 196.842 kb on + strand, within H281DRAFT_01353at 196.889 kb on + strand, within H281DRAFT_01353at 196.890 kb on - strand, within H281DRAFT_01353at 197.039 kb on - strand, within H281DRAFT_01353at 197.948 kb on - strand, within H281DRAFT_01354at 198.330 kb on - strandat 198.362 kb on + strandat 198.621 kb on + strandat 199.198 kb on + strand, within H281DRAFT_01355at 199.244 kb on + strand, within H281DRAFT_01355at 199.245 kb on - strand, within H281DRAFT_01355

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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196,439 + +1.5
196,628 - H281DRAFT_01353 0.26 +1.1
196,689 + H281DRAFT_01353 0.34 +0.4
196,689 + H281DRAFT_01353 0.34 +0.1
196,707 - H281DRAFT_01353 0.37 +0.7
196,842 + H281DRAFT_01353 0.55 -0.3
196,889 + H281DRAFT_01353 0.62 +0.8
196,890 - H281DRAFT_01353 0.62 +0.8
197,039 - H281DRAFT_01353 0.82 -0.1
197,948 - H281DRAFT_01354 0.56 +0.5
198,330 - +0.4
198,362 + +0.2
198,621 + +0.1
199,198 + H281DRAFT_01355 0.56 +0.3
199,244 + H281DRAFT_01355 0.59 +0.2
199,245 - H281DRAFT_01355 0.60 +0.1

Or see this region's nucleotide sequence