Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00918

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00917 and H281DRAFT_00918 are separated by 24 nucleotidesH281DRAFT_00918 and H281DRAFT_00919 are separated by 139 nucleotidesH281DRAFT_00919 and H281DRAFT_00920 are separated by 214 nucleotides H281DRAFT_00917: H281DRAFT_00917 - acetyl-CoA C-acetyltransferase, at 1,021,028 to 1,022,206 _00917 H281DRAFT_00918: H281DRAFT_00918 - Conserved secreted protein, at 1,022,231 to 1,022,746 _00918 H281DRAFT_00919: H281DRAFT_00919 - hypothetical protein, at 1,022,886 to 1,023,242 _00919 H281DRAFT_00920: H281DRAFT_00920 - transcriptional regulator, GntR family, at 1,023,457 to 1,024,980 _00920 Position (kb) 1022 1023Strain fitness (log2 ratio) -1 0 1at 1021.502 kb on + strand, within H281DRAFT_00917at 1021.650 kb on - strand, within H281DRAFT_00917at 1022.162 kb on - strandat 1022.162 kb on - strandat 1022.332 kb on - strand, within H281DRAFT_00918at 1022.674 kb on + strandat 1022.675 kb on - strand, within H281DRAFT_00918at 1022.784 kb on + strandat 1022.785 kb on - strandat 1022.858 kb on + strandat 1022.859 kb on - strandat 1022.865 kb on - strandat 1022.887 kb on + strandat 1022.888 kb on - strandat 1022.888 kb on - strandat 1023.021 kb on - strand, within H281DRAFT_00919at 1023.280 kb on + strandat 1023.313 kb on + strandat 1023.357 kb on + strandat 1023.383 kb on - strandat 1023.437 kb on - strandat 1023.437 kb on - strandat 1023.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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1,021,502 + H281DRAFT_00917 0.40 -0.1
1,021,650 - H281DRAFT_00917 0.53 +0.7
1,022,162 - +0.2
1,022,162 - +0.3
1,022,332 - H281DRAFT_00918 0.20 +0.9
1,022,674 + -0.4
1,022,675 - H281DRAFT_00918 0.86 +0.4
1,022,784 + -0.1
1,022,785 - +0.3
1,022,858 + -0.2
1,022,859 - -0.1
1,022,865 - +0.0
1,022,887 + +0.6
1,022,888 - +0.4
1,022,888 - -0.4
1,023,021 - H281DRAFT_00919 0.38 -0.3
1,023,280 + -0.7
1,023,313 + +0.4
1,023,357 + -0.1
1,023,383 - -0.0
1,023,437 - +0.2
1,023,437 - -0.7
1,023,560 - +0.3

Or see this region's nucleotide sequence