Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00229

Experiment: 3-Hydroxypropionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00228 and H281DRAFT_00229 are separated by 151 nucleotidesH281DRAFT_00229 and H281DRAFT_00230 are separated by 113 nucleotides H281DRAFT_00228: H281DRAFT_00228 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 247,194 to 248,510 _00228 H281DRAFT_00229: H281DRAFT_00229 - hypothetical protein, at 248,662 to 248,928 _00229 H281DRAFT_00230: H281DRAFT_00230 - diguanylate cyclase (GGDEF) domain-containing protein, at 249,042 to 250,727 _00230 Position (kb) 248 249Strain fitness (log2 ratio) -2 -1 0 1 2at 248.200 kb on - strand, within H281DRAFT_00228at 248.712 kb on + strand, within H281DRAFT_00229at 248.742 kb on + strand, within H281DRAFT_00229at 248.742 kb on + strand, within H281DRAFT_00229at 248.756 kb on + strand, within H281DRAFT_00229at 248.859 kb on - strand, within H281DRAFT_00229at 248.979 kb on - strandat 249.044 kb on - strandat 249.477 kb on + strand, within H281DRAFT_00230at 249.478 kb on - strand, within H281DRAFT_00230at 249.593 kb on + strand, within H281DRAFT_00230at 249.594 kb on - strand, within H281DRAFT_00230at 249.732 kb on - strand, within H281DRAFT_00230at 249.817 kb on + strand, within H281DRAFT_00230at 249.818 kb on - strand, within H281DRAFT_00230at 249.915 kb on + strand, within H281DRAFT_00230

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-Hydroxypropionate (C)
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248,200 - H281DRAFT_00228 0.76 +1.4
248,712 + H281DRAFT_00229 0.19 -0.0
248,742 + H281DRAFT_00229 0.30 -0.4
248,742 + H281DRAFT_00229 0.30 +0.1
248,756 + H281DRAFT_00229 0.35 +1.1
248,859 - H281DRAFT_00229 0.74 +0.4
248,979 - +0.2
249,044 - +2.0
249,477 + H281DRAFT_00230 0.26 +0.3
249,478 - H281DRAFT_00230 0.26 +0.5
249,593 + H281DRAFT_00230 0.33 -0.1
249,594 - H281DRAFT_00230 0.33 -2.6
249,732 - H281DRAFT_00230 0.41 -0.0
249,817 + H281DRAFT_00230 0.46 -0.3
249,818 - H281DRAFT_00230 0.46 -0.2
249,915 + H281DRAFT_00230 0.52 +0.5

Or see this region's nucleotide sequence