Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3772 and HP15_3773 are separated by 15 nucleotides HP15_3773 and HP15_3774 are separated by 16 nucleotides HP15_3774 and HP15_3775 are separated by 10 nucleotides HP15_3775 and HP15_3776 are separated by 79 nucleotides
HP15_3772: HP15_3772 - cytochrome c oxidase, subunit I, at 3,994,101 to 3,995,705
_3772
HP15_3773: HP15_3773 - cytochrome c oxidase assembly protein CtaG/Cox11, at 3,995,721 to 3,996,323
_3773
HP15_3774: HP15_3774 - cytochrome c oxidase subunit III, at 3,996,340 to 3,997,227
_3774
HP15_3775: HP15_3775 - conserved hypothetical protein, membrane, at 3,997,238 to 3,997,441
_3775
HP15_3776: HP15_3776 - conserved hypothetical protein, membrane, at 3,997,521 to 3,998,258
_3776
Position (kb)
3996
3997
3998 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3995.372 kb on + strand, within HP15_3772 at 3995.527 kb on - strand, within HP15_3772 at 3995.588 kb on + strand at 3995.596 kb on - strand at 3995.626 kb on - strand at 3995.631 kb on + strand at 3995.646 kb on - strand at 3995.654 kb on + strand at 3995.783 kb on - strand, within HP15_3773 at 3995.794 kb on + strand, within HP15_3773 at 3995.896 kb on + strand, within HP15_3773 at 3995.979 kb on - strand, within HP15_3773 at 3995.988 kb on + strand, within HP15_3773 at 3995.988 kb on + strand, within HP15_3773 at 3995.988 kb on + strand, within HP15_3773 at 3995.996 kb on + strand, within HP15_3773 at 3995.996 kb on - strand, within HP15_3773 at 3996.050 kb on + strand, within HP15_3773 at 3996.058 kb on - strand, within HP15_3773 at 3996.058 kb on - strand, within HP15_3773 at 3996.081 kb on + strand, within HP15_3773 at 3996.088 kb on + strand, within HP15_3773 at 3996.088 kb on + strand, within HP15_3773 at 3996.239 kb on + strand, within HP15_3773 at 3996.247 kb on - strand, within HP15_3773 at 3996.269 kb on + strand at 3996.317 kb on + strand at 3996.564 kb on + strand, within HP15_3774 at 3996.648 kb on + strand, within HP15_3774 at 3996.672 kb on + strand, within HP15_3774 at 3996.737 kb on + strand, within HP15_3774 at 3996.737 kb on + strand, within HP15_3774 at 3996.748 kb on + strand, within HP15_3774 at 3996.756 kb on - strand, within HP15_3774 at 3996.788 kb on - strand, within HP15_3774 at 3996.801 kb on + strand, within HP15_3774 at 3996.846 kb on + strand, within HP15_3774 at 3996.886 kb on - strand, within HP15_3774 at 3996.915 kb on + strand, within HP15_3774 at 3996.932 kb on + strand, within HP15_3774 at 3997.051 kb on + strand, within HP15_3774 at 3997.308 kb on - strand, within HP15_3775 at 3997.316 kb on + strand, within HP15_3775 at 3997.350 kb on + strand, within HP15_3775 at 3997.362 kb on + strand, within HP15_3775 at 3997.507 kb on + strand at 3997.525 kb on - strand at 3997.609 kb on + strand, within HP15_3776 at 3997.708 kb on + strand, within HP15_3776 at 3997.713 kb on + strand, within HP15_3776 at 3997.713 kb on + strand, within HP15_3776 at 3997.713 kb on + strand, within HP15_3776 at 3997.728 kb on - strand, within HP15_3776 at 3997.885 kb on + strand, within HP15_3776 at 3998.021 kb on - strand, within HP15_3776 at 3998.024 kb on + strand, within HP15_3776 at 3998.170 kb on + strand, within HP15_3776 at 3998.171 kb on - strand, within HP15_3776
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,995,372 + HP15_3772 0.79 +1.6 3,995,527 - HP15_3772 0.89 +0.6 3,995,588 + +0.3 3,995,596 - +0.4 3,995,626 - +0.7 3,995,631 + +0.4 3,995,646 - +0.4 3,995,654 + +1.1 3,995,783 - HP15_3773 0.10 +2.3 3,995,794 + HP15_3773 0.12 -0.6 3,995,896 + HP15_3773 0.29 +0.4 3,995,979 - HP15_3773 0.43 +0.5 3,995,988 + HP15_3773 0.44 -2.1 3,995,988 + HP15_3773 0.44 +0.3 3,995,988 + HP15_3773 0.44 +0.2 3,995,996 + HP15_3773 0.46 +0.5 3,995,996 - HP15_3773 0.46 -0.3 3,996,050 + HP15_3773 0.55 -0.3 3,996,058 - HP15_3773 0.56 +0.1 3,996,058 - HP15_3773 0.56 -0.0 3,996,081 + HP15_3773 0.60 +0.9 3,996,088 + HP15_3773 0.61 -0.3 3,996,088 + HP15_3773 0.61 -0.6 3,996,239 + HP15_3773 0.86 +0.4 3,996,247 - HP15_3773 0.87 -0.0 3,996,269 + +0.4 3,996,317 + +0.1 3,996,564 + HP15_3774 0.25 -2.4 3,996,648 + HP15_3774 0.35 -0.5 3,996,672 + HP15_3774 0.37 +0.4 3,996,737 + HP15_3774 0.45 +0.6 3,996,737 + HP15_3774 0.45 +0.5 3,996,748 + HP15_3774 0.46 +0.7 3,996,756 - HP15_3774 0.47 -0.2 3,996,788 - HP15_3774 0.50 +0.5 3,996,801 + HP15_3774 0.52 +0.9 3,996,846 + HP15_3774 0.57 -0.9 3,996,886 - HP15_3774 0.61 +0.8 3,996,915 + HP15_3774 0.65 +0.3 3,996,932 + HP15_3774 0.67 +0.3 3,997,051 + HP15_3774 0.80 +0.7 3,997,308 - HP15_3775 0.34 +0.5 3,997,316 + HP15_3775 0.38 +0.2 3,997,350 + HP15_3775 0.55 +0.5 3,997,362 + HP15_3775 0.61 -0.5 3,997,507 + -0.0 3,997,525 - +0.2 3,997,609 + HP15_3776 0.12 +0.2 3,997,708 + HP15_3776 0.25 -1.2 3,997,713 + HP15_3776 0.26 +1.1 3,997,713 + HP15_3776 0.26 -1.8 3,997,713 + HP15_3776 0.26 +0.8 3,997,728 - HP15_3776 0.28 -0.3 3,997,885 + HP15_3776 0.49 +0.4 3,998,021 - HP15_3776 0.68 -0.7 3,998,024 + HP15_3776 0.68 -0.1 3,998,170 + HP15_3776 0.88 +0.6 3,998,171 - HP15_3776 0.88 -0.5
Or see this region's nucleotide sequence