Strain Fitness in Marinobacter adhaerens HP15 around HP15_360

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_359 and HP15_360 are separated by 10 nucleotidesHP15_360 and HP15_361 overlap by 4 nucleotidesHP15_361 and HP15_362 are separated by 20 nucleotides HP15_359: HP15_359 - conserved hypothetical protein, at 360,019 to 361,131 _359 HP15_360: HP15_360 - conserved hypothetical protein, secreted, at 361,142 to 362,221 _360 HP15_361: HP15_361 - conserved hypothetical protein, secreted, at 362,218 to 362,766 _361 HP15_362: HP15_362 - conserved hypothetical protein, secreted, at 362,787 to 365,189 _362 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2 3at 360.407 kb on + strand, within HP15_359at 360.413 kb on - strand, within HP15_359at 360.413 kb on - strand, within HP15_359at 360.413 kb on - strand, within HP15_359at 360.447 kb on - strand, within HP15_359at 360.489 kb on - strand, within HP15_359at 360.505 kb on - strand, within HP15_359at 360.540 kb on - strand, within HP15_359at 360.546 kb on + strand, within HP15_359at 360.547 kb on - strand, within HP15_359at 360.700 kb on - strand, within HP15_359at 360.729 kb on + strand, within HP15_359at 360.807 kb on + strand, within HP15_359at 360.885 kb on + strand, within HP15_359at 360.893 kb on - strand, within HP15_359at 360.960 kb on + strand, within HP15_359at 361.043 kb on + strandat 361.128 kb on - strandat 361.133 kb on - strandat 361.155 kb on + strandat 361.213 kb on - strandat 361.220 kb on + strandat 361.246 kb on - strandat 361.290 kb on + strand, within HP15_360at 361.290 kb on + strand, within HP15_360at 361.379 kb on + strand, within HP15_360at 361.463 kb on - strand, within HP15_360at 361.487 kb on + strand, within HP15_360at 361.550 kb on + strand, within HP15_360at 361.584 kb on - strand, within HP15_360at 361.584 kb on - strand, within HP15_360at 361.591 kb on + strand, within HP15_360at 361.592 kb on + strand, within HP15_360at 361.592 kb on + strand, within HP15_360at 361.592 kb on + strand, within HP15_360at 361.609 kb on + strand, within HP15_360at 361.640 kb on - strand, within HP15_360at 361.704 kb on - strand, within HP15_360at 361.709 kb on - strandat 361.713 kb on + strand, within HP15_360at 362.023 kb on + strand, within HP15_360at 362.093 kb on + strand, within HP15_360at 362.202 kb on + strandat 362.202 kb on - strandat 362.215 kb on - strandat 362.237 kb on + strandat 362.332 kb on - strand, within HP15_361at 362.332 kb on - strand, within HP15_361at 362.334 kb on + strand, within HP15_361at 362.334 kb on + strand, within HP15_361at 362.342 kb on - strand, within HP15_361at 362.342 kb on - strand, within HP15_361at 362.381 kb on + strand, within HP15_361at 362.394 kb on - strand, within HP15_361at 362.516 kb on + strand, within HP15_361at 362.579 kb on - strand, within HP15_361at 362.591 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.609 kb on - strand, within HP15_361at 362.609 kb on - strand, within HP15_361at 362.624 kb on - strand, within HP15_361at 362.646 kb on + strand, within HP15_361at 362.664 kb on - strand, within HP15_361at 362.675 kb on + strand, within HP15_361at 362.695 kb on - strand, within HP15_361at 362.776 kb on + strandat 362.776 kb on + strandat 362.776 kb on + strandat 362.784 kb on - strandat 362.784 kb on - strandat 362.802 kb on - strandat 362.832 kb on + strandat 362.854 kb on - strandat 362.855 kb on - strandat 362.889 kb on - strandat 362.890 kb on + strandat 362.941 kb on + strandat 362.966 kb on + strandat 363.030 kb on - strand, within HP15_362at 363.064 kb on + strand, within HP15_362at 363.160 kb on + strand, within HP15_362

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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360,407 + HP15_359 0.35 +1.5
360,413 - HP15_359 0.35 +0.1
360,413 - HP15_359 0.35 -0.8
360,413 - HP15_359 0.35 -0.2
360,447 - HP15_359 0.38 -1.7
360,489 - HP15_359 0.42 -0.5
360,505 - HP15_359 0.44 -0.4
360,540 - HP15_359 0.47 +0.6
360,546 + HP15_359 0.47 +2.8
360,547 - HP15_359 0.47 -0.5
360,700 - HP15_359 0.61 -2.2
360,729 + HP15_359 0.64 +0.4
360,807 + HP15_359 0.71 +1.0
360,885 + HP15_359 0.78 +0.0
360,893 - HP15_359 0.79 +0.4
360,960 + HP15_359 0.85 -0.2
361,043 + +0.2
361,128 - -0.5
361,133 - -1.1
361,155 + +1.0
361,213 - -0.5
361,220 + +0.3
361,246 - +0.1
361,290 + HP15_360 0.14 +1.3
361,290 + HP15_360 0.14 +0.6
361,379 + HP15_360 0.22 -0.9
361,463 - HP15_360 0.30 -0.2
361,487 + HP15_360 0.32 +0.2
361,550 + HP15_360 0.38 +1.2
361,584 - HP15_360 0.41 +1.2
361,584 - HP15_360 0.41 +0.7
361,591 + HP15_360 0.42 -1.1
361,592 + HP15_360 0.42 +0.3
361,592 + HP15_360 0.42 +0.5
361,592 + HP15_360 0.42 +0.6
361,609 + HP15_360 0.43 +0.6
361,640 - HP15_360 0.46 -0.7
361,704 - HP15_360 0.52 +0.4
361,709 - -0.7
361,713 + HP15_360 0.53 +0.4
362,023 + HP15_360 0.82 +0.2
362,093 + HP15_360 0.88 +1.0
362,202 + +1.0
362,202 - +0.4
362,215 - -0.9
362,237 + +0.5
362,332 - HP15_361 0.21 +0.7
362,332 - HP15_361 0.21 +0.6
362,334 + HP15_361 0.21 +0.5
362,334 + HP15_361 0.21 -0.1
362,342 - HP15_361 0.23 +0.8
362,342 - HP15_361 0.23 +0.5
362,381 + HP15_361 0.30 +0.0
362,394 - HP15_361 0.32 -1.9
362,516 + HP15_361 0.54 -2.1
362,579 - HP15_361 0.66 -0.4
362,591 + HP15_361 0.68 -0.5
362,601 + HP15_361 0.70 +2.0
362,601 + HP15_361 0.70 +0.7
362,601 + HP15_361 0.70 +1.0
362,609 - HP15_361 0.71 -0.6
362,609 - HP15_361 0.71 -1.0
362,624 - HP15_361 0.74 +0.2
362,646 + HP15_361 0.78 +2.0
362,664 - HP15_361 0.81 -0.4
362,675 + HP15_361 0.83 -0.1
362,695 - HP15_361 0.87 +0.2
362,776 + +0.4
362,776 + -0.4
362,776 + -0.8
362,784 - -0.8
362,784 - -2.2
362,802 - -0.2
362,832 + -0.2
362,854 - +0.2
362,855 - +0.1
362,889 - +0.0
362,890 + -0.8
362,941 + +0.7
362,966 + -1.6
363,030 - HP15_362 0.10 -1.8
363,064 + HP15_362 0.12 +1.0
363,160 + HP15_362 0.16 +0.3

Or see this region's nucleotide sequence