Strain Fitness in Marinobacter adhaerens HP15 around HP15_3374

Experiment: m.b. Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3372 and HP15_3373 are separated by 170 nucleotidesHP15_3373 and HP15_3374 are separated by 239 nucleotidesHP15_3374 and HP15_3375 are separated by 17 nucleotides HP15_3372: HP15_3372 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,539,016 to 3,539,711 _3372 HP15_3373: HP15_3373 - cold shock, CspA, at 3,539,882 to 3,540,088 _3373 HP15_3374: HP15_3374 - protein CrcB-like protein, at 3,540,328 to 3,540,708 _3374 HP15_3375: HP15_3375 - acyl-coenzyme A dehydrogenase, at 3,540,726 to 3,543,176 _3375 Position (kb) 3540 3541Strain fitness (log2 ratio) -2 -1 0 1at 3539.383 kb on + strand, within HP15_3372at 3539.438 kb on + strand, within HP15_3372at 3539.580 kb on + strand, within HP15_3372at 3539.674 kb on - strandat 3539.674 kb on - strandat 3539.692 kb on + strandat 3539.692 kb on + strandat 3539.692 kb on + strandat 3539.918 kb on - strand, within HP15_3373at 3540.146 kb on + strandat 3540.197 kb on + strandat 3540.375 kb on + strand, within HP15_3374at 3540.402 kb on - strand, within HP15_3374at 3540.575 kb on + strand, within HP15_3374at 3540.703 kb on + strandat 3540.708 kb on + strandat 3540.867 kb on + strandat 3540.885 kb on - strandat 3540.969 kb on + strandat 3540.969 kb on + strandat 3540.977 kb on - strand, within HP15_3375at 3541.346 kb on + strand, within HP15_3375at 3541.415 kb on + strand, within HP15_3375at 3541.416 kb on + strand, within HP15_3375at 3541.673 kb on - strand, within HP15_3375at 3541.690 kb on - strand, within HP15_3375at 3541.690 kb on - strand, within HP15_3375at 3541.700 kb on - strand, within HP15_3375

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM
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3,539,383 + HP15_3372 0.53 -0.6
3,539,438 + HP15_3372 0.61 -2.6
3,539,580 + HP15_3372 0.81 +0.7
3,539,674 - -0.2
3,539,674 - +0.0
3,539,692 + +0.1
3,539,692 + +0.1
3,539,692 + -0.4
3,539,918 - HP15_3373 0.17 +0.7
3,540,146 + +0.7
3,540,197 + +1.0
3,540,375 + HP15_3374 0.12 -1.1
3,540,402 - HP15_3374 0.19 +0.2
3,540,575 + HP15_3374 0.65 -0.8
3,540,703 + -1.6
3,540,708 + +0.6
3,540,867 + +0.6
3,540,885 - +0.1
3,540,969 + +0.1
3,540,969 + -0.1
3,540,977 - HP15_3375 0.10 -1.0
3,541,346 + HP15_3375 0.25 +0.3
3,541,415 + HP15_3375 0.28 -0.5
3,541,416 + HP15_3375 0.28 -0.2
3,541,673 - HP15_3375 0.39 +0.7
3,541,690 - HP15_3375 0.39 +0.5
3,541,690 - HP15_3375 0.39 -1.1
3,541,700 - HP15_3375 0.40 +0.5

Or see this region's nucleotide sequence