Experiment: m.b. Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3038 and HP15_3039 are separated by 14 nucleotides HP15_3039 and HP15_3040 overlap by 13 nucleotides
HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295
_3038
HP15_3039: HP15_3039 - N-succinylglutamate 5-semialdehyde dehydrogenase, at 3,185,310 to 3,186,785
_3039
HP15_3040: HP15_3040 - Arginine N-succinyltransferase (EC 2.3.1.109) (from data) , at 3,186,773 to 3,187,873
_3040
Position (kb)
3185
3186
3187 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3184.340 kb on + strand, within HP15_3038 at 3184.368 kb on + strand, within HP15_3038 at 3184.376 kb on - strand, within HP15_3038 at 3184.508 kb on + strand, within HP15_3038 at 3184.568 kb on + strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.643 kb on - strand, within HP15_3038 at 3184.760 kb on + strand, within HP15_3038 at 3184.868 kb on - strand, within HP15_3038 at 3184.931 kb on - strand, within HP15_3038 at 3184.978 kb on - strand, within HP15_3038 at 3185.073 kb on - strand, within HP15_3038 at 3185.103 kb on + strand, within HP15_3038 at 3185.122 kb on + strand, within HP15_3038 at 3185.122 kb on + strand, within HP15_3038 at 3185.219 kb on + strand at 3185.219 kb on + strand at 3185.386 kb on + strand at 3185.518 kb on - strand, within HP15_3039 at 3185.542 kb on - strand, within HP15_3039 at 3185.659 kb on + strand, within HP15_3039 at 3185.761 kb on + strand, within HP15_3039 at 3185.761 kb on + strand, within HP15_3039 at 3185.943 kb on + strand, within HP15_3039 at 3186.099 kb on - strand, within HP15_3039 at 3186.101 kb on + strand, within HP15_3039 at 3186.161 kb on - strand, within HP15_3039 at 3186.278 kb on - strand, within HP15_3039 at 3186.283 kb on - strand, within HP15_3039 at 3186.305 kb on + strand, within HP15_3039 at 3186.451 kb on + strand, within HP15_3039 at 3186.558 kb on - strand, within HP15_3039 at 3186.737 kb on - strand at 3186.795 kb on + strand at 3186.803 kb on - strand at 3186.805 kb on - strand at 3186.899 kb on - strand, within HP15_3040 at 3186.913 kb on + strand, within HP15_3040 at 3186.987 kb on + strand, within HP15_3040 at 3186.988 kb on - strand, within HP15_3040 at 3187.154 kb on - strand, within HP15_3040 at 3187.160 kb on + strand, within HP15_3040 at 3187.179 kb on + strand, within HP15_3040 at 3187.327 kb on + strand, within HP15_3040 at 3187.328 kb on - strand, within HP15_3040 at 3187.491 kb on + strand, within HP15_3040 at 3187.503 kb on + strand, within HP15_3040 at 3187.506 kb on - strand, within HP15_3040 at 3187.546 kb on + strand, within HP15_3040 at 3187.633 kb on - strand, within HP15_3040 at 3187.682 kb on + strand, within HP15_3040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.025 mM remove 3,184,340 + HP15_3038 0.29 +0.1 3,184,368 + HP15_3038 0.31 -0.7 3,184,376 - HP15_3038 0.31 -0.3 3,184,508 + HP15_3038 0.41 -0.4 3,184,568 + HP15_3038 0.46 -0.7 3,184,643 - HP15_3038 0.51 -0.5 3,184,643 - HP15_3038 0.51 +0.7 3,184,760 + HP15_3038 0.60 -2.7 3,184,868 - HP15_3038 0.68 +1.4 3,184,931 - HP15_3038 0.73 +0.8 3,184,978 - HP15_3038 0.76 -0.1 3,185,073 - HP15_3038 0.83 -1.3 3,185,103 + HP15_3038 0.86 -0.7 3,185,122 + HP15_3038 0.87 -0.5 3,185,122 + HP15_3038 0.87 -0.9 3,185,219 + +0.8 3,185,219 + -0.5 3,185,386 + -1.2 3,185,518 - HP15_3039 0.14 -0.9 3,185,542 - HP15_3039 0.16 -1.8 3,185,659 + HP15_3039 0.24 -1.5 3,185,761 + HP15_3039 0.31 -0.5 3,185,761 + HP15_3039 0.31 -0.3 3,185,943 + HP15_3039 0.43 -0.4 3,186,099 - HP15_3039 0.53 -1.3 3,186,101 + HP15_3039 0.54 -0.2 3,186,161 - HP15_3039 0.58 -0.7 3,186,278 - HP15_3039 0.66 -0.8 3,186,283 - HP15_3039 0.66 +0.1 3,186,305 + HP15_3039 0.67 -1.4 3,186,451 + HP15_3039 0.77 -0.8 3,186,558 - HP15_3039 0.85 +1.1 3,186,737 - -0.3 3,186,795 + +0.2 3,186,803 - -0.5 3,186,805 - -0.1 3,186,899 - HP15_3040 0.11 +0.2 3,186,913 + HP15_3040 0.13 -0.4 3,186,987 + HP15_3040 0.19 +1.5 3,186,988 - HP15_3040 0.20 +0.1 3,187,154 - HP15_3040 0.35 -0.8 3,187,160 + HP15_3040 0.35 -1.0 3,187,179 + HP15_3040 0.37 +2.3 3,187,327 + HP15_3040 0.50 +0.2 3,187,328 - HP15_3040 0.50 -0.9 3,187,491 + HP15_3040 0.65 -0.1 3,187,503 + HP15_3040 0.66 +0.3 3,187,506 - HP15_3040 0.67 -0.5 3,187,546 + HP15_3040 0.70 -2.3 3,187,633 - HP15_3040 0.78 -0.2 3,187,682 + HP15_3040 0.83 +0.4
Or see this region's nucleotide sequence